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The map label for this gene is yfdE [H]

Identifier: 78045093

GI number: 78045093

Start: 508983

End: 509990

Strand: Direct

Name: yfdE [H]

Synonym: CHY_0591

Alternate gene names: 78045093

Gene position: 508983-509990 (Clockwise)

Preceding gene: 78044149

Following gene: 78042621

Centisome position: 21.19

GC content: 44.35

Gene sequence:

>1008_bases
TTGAATTTACTTCACGACCAGCCGCTAATTTTGGACTTAACCCGCCTTTTACCCGGTCCCTATGGTACGTTTCTATTGGC
AGCGTACGGGGCGAAGGTGATCAAAATTGAAGAACCGGTGGTCGGGGACTATTTAAAAAGTATGTTTAGTTCTGATGGCA
AGGAGTCATTTATTTATCGGGTCTTAAACGCCGATAAAGAAAAAATTTATTTAAACCTTAAAGATGCCAGTGATCGGGAA
AAATTTTTAGATTTAGTTAAGGAGGCTAATGTTTTAGTGGAAAGCTTTCGCCCCAAGGTTATGGAACGTTTGGGCATAGG
TTTTAAGAGGCTTAAAGAAATAAATCCAAAGCTTATTTACATTAACCTGGGGGGCTATCTGGAGGGGTCCGAGGAGGCAG
AAAAAGCGGGACATGACATAAACTATCTGGCGCAAAGTGGAATCCTGGGGGATACCTATAAGGATGGACCGGTGATCCTT
GGAGCACCAATTGCTGATTTTGCCGGAGGACTTGCCTTGAGCTCCCTGGTGATGGGTGGCTTATATTATCAGCAACTTAC
GGGACAGGGGATGTATATCCAAATAGGAATGGCAGAGCTTATGAAAAGCTGGGGTGTACTGGCTGCCGCCGTTTACGGTG
AAAAAAATAAAGTTCCGGGCCCGGGTAAAGGAATCTTAAAAGGTGGGGTAGTTTGCTACAATATCTATCGAGCTAAAGAT
GGGTACTTAGCCCTGGGAGCTTTGGAAGAAAAGTTCTGGTTAAATTTTTTAAGGGCTCTTGGGCGGGAAGATTTAAAACC
GGGGCAGTTTACCCCGGCGGTCAAGGGAAACCGGTACTATGACGAAGTTTGCGCTATCTTTGCTAATTTGACATTAATTG
AGGTGGAGAAGCTTTTTAAGGATGTAGATTGTTGTCTGACTCCTGTGAAAGAGCTAAAGGATATTGCAACCTCCGATGTG
GTGGAAGGTAGCGAGAAAGCTCTGGGATTTTTCCGGGTAGAAAGGTAA

Upstream 100 bases:

>100_bases
TTAATAACGGCCAGAAAGCTGAACTTTCCAAAATTGCCGGATTTAAAAGATCGGCTTTGTATCAACAGCTTAAGGGCCAA
GCCAGGGAGGGGAAAAAAGC

Downstream 100 bases:

>100_bases
GTTGACGTGTTTAAGATATTTTTCTTTTGGTAAAAGGGATAATTTTTGTGGTAATGTTTAACTCCTCCATAAGCCTTTTT
CTTTCCAAAAAGAGGTTTTC

Product: CAIB/BAIF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MNLLHDQPLILDLTRLLPGPYGTFLLAAYGAKVIKIEEPVVGDYLKSMFSSDGKESFIYRVLNADKEKIYLNLKDASDRE
KFLDLVKEANVLVESFRPKVMERLGIGFKRLKEINPKLIYINLGGYLEGSEEAEKAGHDINYLAQSGILGDTYKDGPVIL
GAPIADFAGGLALSSLVMGGLYYQQLTGQGMYIQIGMAELMKSWGVLAAAVYGEKNKVPGPGKGILKGGVVCYNIYRAKD
GYLALGALEEKFWLNFLRALGREDLKPGQFTPAVKGNRYYDEVCAIFANLTLIEVEKLFKDVDCCLTPVKELKDIATSDV
VEGSEKALGFFRVER

Sequences:

>Translated_335_residues
MNLLHDQPLILDLTRLLPGPYGTFLLAAYGAKVIKIEEPVVGDYLKSMFSSDGKESFIYRVLNADKEKIYLNLKDASDRE
KFLDLVKEANVLVESFRPKVMERLGIGFKRLKEINPKLIYINLGGYLEGSEEAEKAGHDINYLAQSGILGDTYKDGPVIL
GAPIADFAGGLALSSLVMGGLYYQQLTGQGMYIQIGMAELMKSWGVLAAAVYGEKNKVPGPGKGILKGGVVCYNIYRAKD
GYLALGALEEKFWLNFLRALGREDLKPGQFTPAVKGNRYYDEVCAIFANLTLIEVEKLFKDVDCCLTPVKELKDIATSDV
VEGSEKALGFFRVER
>Mature_335_residues
MNLLHDQPLILDLTRLLPGPYGTFLLAAYGAKVIKIEEPVVGDYLKSMFSSDGKESFIYRVLNADKEKIYLNLKDASDRE
KFLDLVKEANVLVESFRPKVMERLGIGFKRLKEINPKLIYINLGGYLEGSEEAEKAGHDINYLAQSGILGDTYKDGPVIL
GAPIADFAGGLALSSLVMGGLYYQQLTGQGMYIQIGMAELMKSWGVLAAAVYGEKNKVPGPGKGILKGGVVCYNIYRAKD
GYLALGALEEKFWLNFLRALGREDLKPGQFTPAVKGNRYYDEVCAIFANLTLIEVEKLFKDVDCCLTPVKELKDIATSDV
VEGSEKALGFFRVER

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI42794625, Length=324, Percent_Identity=31.1728395061728, Blast_Score=134, Evalue=9e-32,
Organism=Homo sapiens, GI266456254, Length=324, Percent_Identity=31.1728395061728, Blast_Score=134, Evalue=1e-31,
Organism=Homo sapiens, GI300863128, Length=243, Percent_Identity=32.9218106995885, Blast_Score=119, Evalue=4e-27,
Organism=Homo sapiens, GI300863124, Length=243, Percent_Identity=32.9218106995885, Blast_Score=119, Evalue=4e-27,
Organism=Homo sapiens, GI266458393, Length=261, Percent_Identity=32.183908045977, Blast_Score=116, Evalue=3e-26,
Organism=Homo sapiens, GI266458397, Length=253, Percent_Identity=32.4110671936759, Blast_Score=114, Evalue=1e-25,
Organism=Homo sapiens, GI300863126, Length=239, Percent_Identity=29.7071129707113, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI266458395, Length=145, Percent_Identity=34.4827586206897, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI42822893, Length=145, Percent_Identity=34.4827586206897, Blast_Score=84, Evalue=2e-16,
Organism=Escherichia coli, GI87082093, Length=257, Percent_Identity=31.5175097276265, Blast_Score=135, Evalue=4e-33,
Organism=Escherichia coli, GI1788717, Length=193, Percent_Identity=31.6062176165803, Blast_Score=100, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI32564160, Length=318, Percent_Identity=27.3584905660377, Blast_Score=107, Evalue=6e-24,
Organism=Caenorhabditis elegans, GI115535051, Length=325, Percent_Identity=28, Blast_Score=107, Evalue=8e-24,
Organism=Drosophila melanogaster, GI24585488, Length=321, Percent_Identity=31.4641744548287, Blast_Score=132, Evalue=3e-31,
Organism=Drosophila melanogaster, GI24648431, Length=341, Percent_Identity=27.5659824046921, Blast_Score=117, Evalue=8e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 37006; Mature: 37006

Theoretical pI: Translated: 5.57; Mature: 5.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLLHDQPLILDLTRLLPGPYGTFLLAAYGAKVIKIEEPVVGDYLKSMFSSDGKESFIYR
CCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHCCCCHHHHHHH
VLNADKEKIYLNLKDASDREKFLDLVKEANVLVESFRPKVMERLGIGFKRLKEINPKLIY
HHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCEEEE
INLGGYLEGSEEAEKAGHDINYLAQSGILGDTYKDGPVILGAPIADFAGGLALSSLVMGG
EEECCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHH
LYYQQLTGQGMYIQIGMAELMKSWGVLAAAVYGEKNKVPGPGKGILKGGVVCYNIYRAKD
HHHHHHCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCEEEEEEEECCC
GYLALGALEEKFWLNFLRALGREDLKPGQFTPAVKGNRYYDEVCAIFANLTLIEVEKLFK
CEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHH
DVDCCLTPVKELKDIATSDVVEGSEKALGFFRVER
HHHHHHHHHHHHHHHHHHHHHCCCCHHCCEEEECC
>Mature Secondary Structure
MNLLHDQPLILDLTRLLPGPYGTFLLAAYGAKVIKIEEPVVGDYLKSMFSSDGKESFIYR
CCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHCCCCHHHHHHH
VLNADKEKIYLNLKDASDREKFLDLVKEANVLVESFRPKVMERLGIGFKRLKEINPKLIY
HHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCEEEE
INLGGYLEGSEEAEKAGHDINYLAQSGILGDTYKDGPVILGAPIADFAGGLALSSLVMGG
EEECCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHH
LYYQQLTGQGMYIQIGMAELMKSWGVLAAAVYGEKNKVPGPGKGILKGGVVCYNIYRAKD
HHHHHHCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCEEEEEEEECCC
GYLALGALEEKFWLNFLRALGREDLKPGQFTPAVKGNRYYDEVCAIFANLTLIEVEKLFK
CEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHH
DVDCCLTPVKELKDIATSDVVEGSEKALGFFRVER
HHHHHHHHHHHHHHHHHHHHHCCCCHHCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]