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The map label for this gene is sigM [H]

Identifier: 78044789

GI number: 78044789

Start: 1675310

End: 1675774

Strand: Direct

Name: sigM [H]

Synonym: CHY_1868

Alternate gene names: 78044789

Gene position: 1675310-1675774 (Clockwise)

Preceding gene: 78043240

Following gene: 78044203

Centisome position: 69.76

GC content: 31.61

Gene sequence:

>465_bases
ATGTGGCAGGAATTGTACCGAATTGTCTATTACTATTTACTTAAACTTGGGTTATCCCATGCCGATGCGGAAGATATAGC
ACAAGAAGTCCTATTGTCTACATACTTACATTTAGACAGTATCCAAGATGGAAATTTGAAATTTTATGTTTTGGCCACGG
CAAAAAATAAGTACATTGACTTTTTTAGAAAGAATAAAAGGGAATTCACTGTACCATCTCTTGGTGATTTTGATGTAAAC
AACTTCTCAGAAATCCATCAAATCGAAAATAAAGAAGTACTAAAAAAAGCAATTAATAAGCTTAATCTTACCGAACAGAA
ACTTTTTTACTTGAAGTACTATTTAGGAATGACAAATCCTGAAATTTCATCTTTGCTTAAAATTAGTCCAGCTTCAGTTA
AGACAATGCTGTGGAGACTAAGAAAAAAGGTAAAGGAATATTTAGAAAAGGAGGATGAAAATTAA

Upstream 100 bases:

>100_bases
CATGCAGGAGATTGGTCTTAAACATTCTCCTGCTTTTTGTTTACTTTTCTCTTGCTTGCACGTCTTTATAAGTGAGAATG
GCTTTAAGGAGGAGGGGTTA

Downstream 100 bases:

>100_bases
ATGGCTGAAAATGAAAATTTTGAAAATGTTAATAATAAGATAAGTTTTGATGAAAAAGCTTTTTTACGTAAAGCTCGTTT
TATAAGCATTCTTCGTATTA

Product: putative RNA polymerase sigma-M factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
MWQELYRIVYYYLLKLGLSHADAEDIAQEVLLSTYLHLDSIQDGNLKFYVLATAKNKYIDFFRKNKREFTVPSLGDFDVN
NFSEIHQIENKEVLKKAINKLNLTEQKLFYLKYYLGMTNPEISSLLKISPASVKTMLWRLRKKVKEYLEKEDEN

Sequences:

>Translated_154_residues
MWQELYRIVYYYLLKLGLSHADAEDIAQEVLLSTYLHLDSIQDGNLKFYVLATAKNKYIDFFRKNKREFTVPSLGDFDVN
NFSEIHQIENKEVLKKAINKLNLTEQKLFYLKYYLGMTNPEISSLLKISPASVKTMLWRLRKKVKEYLEKEDEN
>Mature_154_residues
MWQELYRIVYYYLLKLGLSHADAEDIAQEVLLSTYLHLDSIQDGNLKFYVLATAKNKYIDFFRKNKREFTVPSLGDFDVN
NFSEIHQIENKEVLKKAINKLNLTEQKLFYLKYYLGMTNPEISSLLKISPASVKTMLWRLRKKVKEYLEKEDEN

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor may be involved in the maintenance of membrane and cell wall integrity in response to salt, acid and e

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014296
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 18311; Mature: 18311

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: PS00622 HTH_LUXR_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWQELYRIVYYYLLKLGLSHADAEDIAQEVLLSTYLHLDSIQDGNLKFYVLATAKNKYID
CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHH
FFRKNKREFTVPSLGDFDVNNFSEIHQIENKEVLKKAINKLNLTEQKLFYLKYYLGMTNP
HHHCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCH
EISSLLKISPASVKTMLWRLRKKVKEYLEKEDEN
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MWQELYRIVYYYLLKLGLSHADAEDIAQEVLLSTYLHLDSIQDGNLKFYVLATAKNKYID
CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHH
FFRKNKREFTVPSLGDFDVNNFSEIHQIENKEVLKKAINKLNLTEQKLFYLKYYLGMTNP
HHHCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCH
EISSLLKISPASVKTMLWRLRKKVKEYLEKEDEN
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377; 12775685; 10216858 [H]