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The map label for this gene is codY [H]

Identifier: 78044784

GI number: 78044784

Start: 123303

End: 124046

Strand: Direct

Name: codY [H]

Synonym: CHY_0141

Alternate gene names: 78044784

Gene position: 123303-124046 (Clockwise)

Preceding gene: 78042726

Following gene: 78044668

Centisome position: 5.13

GC content: 44.35

Gene sequence:

>744_bases
ATGCTGAGTTTACTGGAAAAAACAAGACTCTTAAACCGCTTTATCCAGCGGAGCCCCCAACGTCCGGAACCCTTTATGGA
ACTGGCGGAAATGCTTGGGGATATTTCAAACGCCAGTGTTTACATTATCGGCCGGAGAAAGATACTGGGGTATTATGAAC
GTCTGGATCTGGTAGGGCTGGTAATTTACGGACGGGATTTAGAAGCGCGCCAGGTAGAGCAGGATTTTCAGGATTGGCTG
TTTTCTTTCAATCAAACGGATCATAACATTAAAGGGGAAGATGGGCTTACTTATACCGTTGTACCGGTTTTTGGCGGTGG
TGAACGGCAGGGAACGATTTTACTGGTCAAAAAGGGACAGGAAGAGTTTAACGCTCAGGACTTAATTTTGTACGAGTACG
CTGCAACCGTGGTGGGTTTGGAAATTCTAAGGCTAAACAGCGAAAAAATGGAAGAAGAAGCCAGGAAAAAAGCTGCGGTT
CGCTTAGCGTTAGATGCCCTTTCTTATTCGGAGCTGGAAGCGGTGAAAAAGATTTTTAGCGAACTTGATGGAGTGGAAGG
CTTTGTGGTGGCAAGTAAGCTTGCGGAACAATATCACCTTACCCGTTCGGTAATTGTGAATGCTTTAAGAAAATTAGAAA
GCGCGGGTGTGATTGATTCCAGGTCTTTGGGAATGAAAGGAACTTACATTCGGATTTTAAACGATTATTTCCTGGATAAG
TTGGAAATTGCCCAGCAAAACTAA

Upstream 100 bases:

>100_bases
GGATAAAGTGGTAATGGTAAATAATTTTTAGGGATTAAGTATAATTATTTAAAAATTTGGCAATATTACTACCGTAAAAT
AAAAAAATGGAGGTAGTAAT

Downstream 100 bases:

>100_bases
GAAGGGTGGTAAGTGGTAGGTGGTGGGTGGTCGGTCGTCGGTAAAAAAATTATATCTTATCACCTACGACAAACCACATA
CCACTATTTTTGGAGGTTGG

Product: transcriptional repressor CodY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MLSLLEKTRLLNRFIQRSPQRPEPFMELAEMLGDISNASVYIIGRRKILGYYERLDLVGLVIYGRDLEARQVEQDFQDWL
FSFNQTDHNIKGEDGLTYTVVPVFGGGERQGTILLVKKGQEEFNAQDLILYEYAATVVGLEILRLNSEKMEEEARKKAAV
RLALDALSYSELEAVKKIFSELDGVEGFVVASKLAEQYHLTRSVIVNALRKLESAGVIDSRSLGMKGTYIRILNDYFLDK
LEIAQQN

Sequences:

>Translated_247_residues
MLSLLEKTRLLNRFIQRSPQRPEPFMELAEMLGDISNASVYIIGRRKILGYYERLDLVGLVIYGRDLEARQVEQDFQDWL
FSFNQTDHNIKGEDGLTYTVVPVFGGGERQGTILLVKKGQEEFNAQDLILYEYAATVVGLEILRLNSEKMEEEARKKAAV
RLALDALSYSELEAVKKIFSELDGVEGFVVASKLAEQYHLTRSVIVNALRKLESAGVIDSRSLGMKGTYIRILNDYFLDK
LEIAQQN
>Mature_247_residues
MLSLLEKTRLLNRFIQRSPQRPEPFMELAEMLGDISNASVYIIGRRKILGYYERLDLVGLVIYGRDLEARQVEQDFQDWL
FSFNQTDHNIKGEDGLTYTVVPVFGGGERQGTILLVKKGQEEFNAQDLILYEYAATVVGLEILRLNSEKMEEEARKKAAV
RLALDALSYSELEAVKKIFSELDGVEGFVVASKLAEQYHLTRSVIVNALRKLESAGVIDSRSLGMKGTYIRILNDYFLDK
LEIAQQN

Specific function: DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of

COG id: COG4465

COG function: function code K; Pleiotropic transcriptional repressor

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CodY family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014154
- InterPro:   IPR010312
- InterPro:   IPR013198
- InterPro:   IPR011991 [H]

Pfam domain/function: PF06018 CodY; PF08222 HTH_CodY [H]

EC number: NA

Molecular weight: Translated: 28105; Mature: 28105

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSLLEKTRLLNRFIQRSPQRPEPFMELAEMLGDISNASVYIIGRRKILGYYERLDLVGL
CCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHEE
VIYGRDLEARQVEQDFQDWLFSFNQTDHNIKGEDGLTYTVVPVFGGGERQGTILLVKKGQ
EEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCC
EEFNAQDLILYEYAATVVGLEILRLNSEKMEEEARKKAAVRLALDALSYSELEAVKKIFS
HHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
ELDGVEGFVVASKLAEQYHLTRSVIVNALRKLESAGVIDSRSLGMKGTYIRILNDYFLDK
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
LEIAQQN
HHHCCCC
>Mature Secondary Structure
MLSLLEKTRLLNRFIQRSPQRPEPFMELAEMLGDISNASVYIIGRRKILGYYERLDLVGL
CCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHEE
VIYGRDLEARQVEQDFQDWLFSFNQTDHNIKGEDGLTYTVVPVFGGGERQGTILLVKKGQ
EEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCC
EEFNAQDLILYEYAATVVGLEILRLNSEKMEEEARKKAAVRLALDALSYSELEAVKKIFS
HHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
ELDGVEGFVVASKLAEQYHLTRSVIVNALRKLESAGVIDSRSLGMKGTYIRILNDYFLDK
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
LEIAQQN
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA