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The map label for this gene is rex

Identifier: 78044604

GI number: 78044604

Start: 295356

End: 295982

Strand: Direct

Name: rex

Synonym: CHY_0339

Alternate gene names: 78044604

Gene position: 295356-295982 (Clockwise)

Preceding gene: 78043087

Following gene: 78045150

Centisome position: 12.3

GC content: 43.7

Gene sequence:

>627_bases
ATGAAAGGCTTTAAAATTCCAGAAGCTACGATTTCAAGGCTTTCGGTATACTCCCGCTATCTGGAAAACCTGTACCGTAA
AGGCATTACTACCGTGTCTTCGGCGGACATTGCCCAGGGGGTAGGGGTAACTTCAGCTCAGGTCAGAAAAGATCTTGCTT
ATTTCGGAGAATTTGGTACCCGGGGAGTTGGCTACAACGTTAAGGAACTTTTAGACCATACTTTAAAAATTTTAGGATTA
AATAATACCTGGAATATGGTAGTGGTGGGCGCTGGAAATCTCGGCTCAGCTCTTTGTGCTTACCGGGGCTTTAGAGAGAG
AGGTTTTTACATAGTAGGGGTTTTTGATAACGATTTGACCAAAATTGGCAAAAAAATTAACGAATACGAAGTTTTACCGA
TTGACAAGTTAGAAGAAGTGGTCAGGGAAAACAACGTGGAGATTGGAATTATTGCCGTTCCGGCTGCTTATGCCCAGGAT
GTCGCTACCCGCTTGGTAAAAGCGGGGGTAAAGGGGATCCTGAACTTTGCCCCGACGGTTTTAAACGTTCCCGATAAAGT
TATCGTTAGAAGCGTGGACCTAACGGTTAATTTAGAAGTTCTAACCTTTAATATTCGCCGCGACTAA

Upstream 100 bases:

>100_bases
TGGAACAAGGAGAATTACCTATAAAAAACTTTTATTATTAAGGGTTATTGTTTATTTTTTTTTCTTTGTGTTATAATTCA
CCTATAAGGAGGGGAGCGGC

Downstream 100 bases:

>100_bases
GACCCTGGTGTTTACCGGGGTTTTTTGTTTGAAAAAAGTAATTGCATGGGTTTTACAAAGATGATAAACTTTTTGTGAAA
GAAGGGGGATTTTGCTTGAA

Product: redox-sensing transcriptional repressor Rex

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MKGFKIPEATISRLSVYSRYLENLYRKGITTVSSADIAQGVGVTSAQVRKDLAYFGEFGTRGVGYNVKELLDHTLKILGL
NNTWNMVVVGAGNLGSALCAYRGFRERGFYIVGVFDNDLTKIGKKINEYEVLPIDKLEEVVRENNVEIGIIAVPAAYAQD
VATRLVKAGVKGILNFAPTVLNVPDKVIVRSVDLTVNLEVLTFNIRRD

Sequences:

>Translated_208_residues
MKGFKIPEATISRLSVYSRYLENLYRKGITTVSSADIAQGVGVTSAQVRKDLAYFGEFGTRGVGYNVKELLDHTLKILGL
NNTWNMVVVGAGNLGSALCAYRGFRERGFYIVGVFDNDLTKIGKKINEYEVLPIDKLEEVVRENNVEIGIIAVPAAYAQD
VATRLVKAGVKGILNFAPTVLNVPDKVIVRSVDLTVNLEVLTFNIRRD
>Mature_208_residues
MKGFKIPEATISRLSVYSRYLENLYRKGITTVSSADIAQGVGVTSAQVRKDLAYFGEFGTRGVGYNVKELLDHTLKILGL
NNTWNMVVVGAGNLGSALCAYRGFRERGFYIVGVFDNDLTKIGKKINEYEVLPIDKLEEVVRENNVEIGIIAVPAAYAQD
VATRLVKAGVKGILNFAPTVLNVPDKVIVRSVDLTVNLEVLTFNIRRD

Specific function: Modulates transcription in response to changes in cellular NADH/NAD(+) redox state

COG id: COG2344

COG function: function code R; AT-rich DNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transcriptional regulatory rex family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): REX_CARHZ (Q3AF82)

Other databases:

- EMBL:   CP000141
- RefSeq:   YP_359202.1
- ProteinModelPortal:   Q3AF82
- SMR:   Q3AF82
- STRING:   Q3AF82
- GeneID:   3727725
- GenomeReviews:   CP000141_GR
- KEGG:   chy:CHY_0339
- NMPDR:   fig|246194.3.peg.455
- TIGR:   CHY_0339
- eggNOG:   COG2344
- HOGENOM:   HBG482264
- OMA:   TRGVGYD
- ProtClustDB:   PRK05472
- BioCyc:   CHYD246194:CHY_0339-MONOMER
- GO:   GO:0005737
- GO:   GO:0006350
- HAMAP:   MF_01131
- InterPro:   IPR003781
- InterPro:   IPR016040
- InterPro:   IPR009718
- InterPro:   IPR022876
- InterPro:   IPR011991
- Gene3D:   G3DSA:3.40.50.720
- Gene3D:   G3DSA:1.10.10.10
- SMART:   SM00881

Pfam domain/function: PF02629 CoA_binding; PF06971 Put_DNA-bind_N

EC number: NA

Molecular weight: Translated: 22915; Mature: 22915

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGFKIPEATISRLSVYSRYLENLYRKGITTVSSADIAQGVGVTSAQVRKDLAYFGEFGT
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHCCCC
RGVGYNVKELLDHTLKILGLNNTWNMVVVGAGNLGSALCAYRGFRERGFYIVGVFDNDLT
CCCCCCHHHHHHHHHHEEECCCCCCEEEEECCCHHHHHHHHHCHHHCCEEEEEEECCHHH
KIGKKINEYEVLPIDKLEEVVRENNVEIGIIAVPAAYAQDVATRLVKAGVKGILNFAPTV
HHHHHCCCEECCCHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCHH
LNVPDKVIVRSVDLTVNLEVLTFNIRRD
HCCCHHHEEEEECEEEEEEEEEEEEECC
>Mature Secondary Structure
MKGFKIPEATISRLSVYSRYLENLYRKGITTVSSADIAQGVGVTSAQVRKDLAYFGEFGT
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHCCCC
RGVGYNVKELLDHTLKILGLNNTWNMVVVGAGNLGSALCAYRGFRERGFYIVGVFDNDLT
CCCCCCHHHHHHHHHHEEECCCCCCEEEEECCCHHHHHHHHHCHHHCCEEEEEEECCHHH
KIGKKINEYEVLPIDKLEEVVRENNVEIGIIAVPAAYAQDVATRLVKAGVKGILNFAPTV
HHHHHCCCEECCCHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCHH
LNVPDKVIVRSVDLTVNLEVLTFNIRRD
HCCCHHHEEEEECEEEEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA