Click here to switch to the map view.

The map label for this gene is pdaB [H]

Identifier: 78044531

GI number: 78044531

Start: 1430489

End: 1431235

Strand: Direct

Name: pdaB [H]

Synonym: CHY_1591

Alternate gene names: 78044531

Gene position: 1430489-1431235 (Clockwise)

Preceding gene: 78042905

Following gene: 78043741

Centisome position: 59.57

GC content: 37.62

Gene sequence:

>747_bases
ATGAAAGTTTTTTTCTTTAATTACAAAAACCTCTGGCAATATACCCTTATCCTCATTTTTGCCATCTTAATTGGATTGGT
ATTTTACCATTATTTAACCGAACCGGTAATAAAACCGCAAATTATCGATTTTTACCCGGTATACAAAGTGGAAACCAGTA
AAAAAGTTGTAGCCCTAACCTTTGATTTGAGCTGGGGAACAAAAACTTATAAACCAATTCTCAATACTCTAAAAAAAGAA
AATATTAAAGCAACCTTTTTTCTTTCCGGCCCCTGGGCCAAACAACATCCGGAAATAGTTCGGGAAATTGTCAAGGACGG
CCATGAAATCGGTAGCCACGGACACCGTCATGTAAATTACACCGGGTTAAGTCCCGAGGAGATTAAAAAAGAAGTGGTCC
TGGCTCATGAAGCCATAAAAGAAGCAAGTAATAAGACTCCAACAATCATCCGCCTACCTAACGGAGATTATAACAAAACT
GTTATCAAAACCTTAAGAGAAATAGGTTATACTGCCATTCAATGGAGCGTAGATTCTTTAGATTGGAAAAATCCCGGAGA
AGAGATAATTTTAAAACGCGTTTTAGACAGTATTCACCCCGGAGCTATAATTTTAATGCATGCCAGTGATACCTGTAAAC
AAACCGGTCAGGTATTGCCAGAAATTATAAAAGAATTAAAAAAACAAGGCTATACTTTCATTACCATTTCCCGGTTGCTC
ACCCTTGGTCCCGCTGCAATTCAGTAA

Upstream 100 bases:

>100_bases
ATTACTTATTTTATAAATAAAGTCAAGTAGGAAAATAAATCATAATTTTAACTTTTAGTACATAAGTTTTATACAAAACC
CACCGAAAGGAGAATTTTAG

Downstream 100 bases:

>100_bases
CCGACCACCAATGGCCTTTCTGAAAAAGGTAAAGATAGATTGACATCAAGATGCTCCATTGAAGCACGCTAACCATCCAG
GCATAGGAAACATCGTATTT

Product: polysaccharide deacetylase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MKVFFFNYKNLWQYTLILIFAILIGLVFYHYLTEPVIKPQIIDFYPVYKVETSKKVVALTFDLSWGTKTYKPILNTLKKE
NIKATFFLSGPWAKQHPEIVREIVKDGHEIGSHGHRHVNYTGLSPEEIKKEVVLAHEAIKEASNKTPTIIRLPNGDYNKT
VIKTLREIGYTAIQWSVDSLDWKNPGEEIILKRVLDSIHPGAIILMHASDTCKQTGQVLPEIIKELKKQGYTFITISRLL
TLGPAAIQ

Sequences:

>Translated_248_residues
MKVFFFNYKNLWQYTLILIFAILIGLVFYHYLTEPVIKPQIIDFYPVYKVETSKKVVALTFDLSWGTKTYKPILNTLKKE
NIKATFFLSGPWAKQHPEIVREIVKDGHEIGSHGHRHVNYTGLSPEEIKKEVVLAHEAIKEASNKTPTIIRLPNGDYNKT
VIKTLREIGYTAIQWSVDSLDWKNPGEEIILKRVLDSIHPGAIILMHASDTCKQTGQVLPEIIKELKKQGYTFITISRLL
TLGPAAIQ
>Mature_248_residues
MKVFFFNYKNLWQYTLILIFAILIGLVFYHYLTEPVIKPQIIDFYPVYKVETSKKVVALTFDLSWGTKTYKPILNTLKKE
NIKATFFLSGPWAKQHPEIVREIVKDGHEIGSHGHRHVNYTGLSPEEIKKEVVLAHEAIKEASNKTPTIIRLPNGDYNKT
VIKTLREIGYTAIQWSVDSLDWKNPGEEIILKRVLDSIHPGAIILMHASDTCKQTGQVLPEIIKELKKQGYTFITISRLL
TLGPAAIQ

Specific function: Necessary to maintain spores after the late stage of sporulation. Might be involved in cortex formation [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Forespore. Note=Produced in the mother cell compartment and transported into the forespore [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323339, Length=160, Percent_Identity=33.125, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509
- InterPro:   IPR014132 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 28373; Mature: 28373

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVFFFNYKNLWQYTLILIFAILIGLVFYHYLTEPVIKPQIIDFYPVYKVETSKKVVALT
CEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECEEEEEEEECCCEEEEEE
FDLSWGTKTYKPILNTLKKENIKATFFLSGPWAKQHPEIVREIVKDGHEIGSHGHRHVNY
EEECCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHCCHHHCCCCCCEEEE
TGLSPEEIKKEVVLAHEAIKEASNKTPTIIRLPNGDYNKTVIKTLREIGYTAIQWSVDSL
CCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHCCCEEEEEEECCC
DWKNPGEEIILKRVLDSIHPGAIILMHASDTCKQTGQVLPEIIKELKKQGYTFITISRLL
CCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHH
TLGPAAIQ
HCCCHHCC
>Mature Secondary Structure
MKVFFFNYKNLWQYTLILIFAILIGLVFYHYLTEPVIKPQIIDFYPVYKVETSKKVVALT
CEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECEEEEEEEECCCEEEEEE
FDLSWGTKTYKPILNTLKKENIKATFFLSGPWAKQHPEIVREIVKDGHEIGSHGHRHVNY
EEECCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHCCHHHCCCCCCEEEE
TGLSPEEIKKEVVLAHEAIKEASNKTPTIIRLPNGDYNKTVIKTLREIGYTAIQWSVDSL
CCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHCCCEEEEEEECCC
DWKNPGEEIILKRVLDSIHPGAIILMHASDTCKQTGQVLPEIIKELKKQGYTFITISRLL
CCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHH
TLGPAAIQ
HCCCHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969501; 9384377; 8576055 [H]