Click here to switch to the map view.

The map label for this gene is spoVT [H]

Identifier: 78044362

GI number: 78044362

Start: 169573

End: 170133

Strand: Direct

Name: spoVT [H]

Synonym: CHY_0202

Alternate gene names: 78044362

Gene position: 169573-170133 (Clockwise)

Preceding gene: 78045210

Following gene: 78044244

Centisome position: 7.06

GC content: 48.66

Gene sequence:

>561_bases
ATGAAAGCAACGGGTATTGTGCGGCGAATTGATGATCTGGGGCGGGTAGTAATTCCCAAGGAGATAAGAAGAACGTTACG
GATAAGAGAGGGGGACCCTCTGGAAATTTTTGTTGACCGGAACGGAGAGGTGATTTTAAAAAAATACTCGCCAATTGGTG
AGCTGGGGGATTTTGCTAAAGAATACGCCGAATCCCTTCATGAATCTTTAGGTCATATTGCCTTTATTGCCGACCGGGAT
ACGATAATAGCGGTGGCTGGAGCCCCGAAAAAAGAGTTTCTCAATAAGCCCATTGGTCCGGCGGTAGAGCGGGCCATGAA
TGAAAGAAAAACCGTGCTGATAACCGCCACCGGGGAACACGAGTACTGTAAGGAATGTATTACCGCCGAAGAGGGCAAGT
GCCTGTTTACTTCGGAAATTATCGCGCCGATTATTGCTGAAGGAGACCCCATCGGGGCTGTAATCATTGCCAGCCGGGAG
CCGGGAGTGAAGTTCGGAACTTTGGAGCAAAAAATGGCGGAAACCGCTGCTCATTTTCTCGCCAAACAAATGGAACAGTA
A

Upstream 100 bases:

>100_bases
AAACTAAGCTTTCTTTCAAGTAAAAACTTAACAAAAAAGTATAAACCCCTCCTTAAGGTAAAATACTAACATTACCAAAC
CACTTAAGGAGGGAATTTTT

Downstream 100 bases:

>100_bases
CCTCCAGGGACGGTTCTGACAGCGTACATATTGAACGCCGTTCAGAACCGTTTATTTATTTTTTCCTGTTTTTCCGAATT
GTTCGAAGAAAACTATTATA

Product: stage V sporulation protein T

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFVDRNGEVILKKYSPIGELGDFAKEYAESLHESLGHIAFIADRD
TIIAVAGAPKKEFLNKPIGPAVERAMNERKTVLITATGEHEYCKECITAEEGKCLFTSEIIAPIIAEGDPIGAVIIASRE
PGVKFGTLEQKMAETAAHFLAKQMEQ

Sequences:

>Translated_186_residues
MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFVDRNGEVILKKYSPIGELGDFAKEYAESLHESLGHIAFIADRD
TIIAVAGAPKKEFLNKPIGPAVERAMNERKTVLITATGEHEYCKECITAEEGKCLFTSEIIAPIIAEGDPIGAVIIASRE
PGVKFGTLEQKMAETAAHFLAKQMEQ
>Mature_186_residues
MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFVDRNGEVILKKYSPIGELGDFAKEYAESLHESLGHIAFIADRD
TIIAVAGAPKKEFLNKPIGPAVERAMNERKTVLITATGEHEYCKECITAEEGKCLFTSEIIAPIIAEGDPIGAVIIASRE
PGVKFGTLEQKMAETAAHFLAKQMEQ

Specific function: Positive and negative transcriptional regulator of sigma G-dependent genes. May provide a mechanism of feedback control that is important for forespore development [H]

COG id: COG2002

COG function: function code K; Regulators of stationary/sporulation gene expression

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis AbrB and Abh [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014213
- InterPro:   IPR006339
- InterPro:   IPR007159 [H]

Pfam domain/function: PF04014 SpoVT_AbrB [H]

EC number: NA

Molecular weight: Translated: 20514; Mature: 20514

Theoretical pI: Translated: 5.75; Mature: 5.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFVDRNGEVILKKYSPIGELGDFAK
CCCHHHHHHHHHCCCEECCHHHHHHHCCCCCCCEEEEEECCCCEEEEECCCCCHHHHHHH
EYAESLHESLGHIAFIADRDTIIAVAGAPKKEFLNKPIGPAVERAMNERKTVLITATGEH
HHHHHHHHHHCCEEEEECCCEEEEEECCCHHHHHCCCCCHHHHHHHCCCCEEEEEECCCH
EYCKECITAEEGKCLFTSEIIAPIIAEGDPIGAVIIASREPGVKFGTLEQKMAETAAHFL
HHHHHHHCCCCCCEEEHHHHHHHHHCCCCCCEEEEEECCCCCCEECHHHHHHHHHHHHHH
AKQMEQ
HHHHCC
>Mature Secondary Structure
MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFVDRNGEVILKKYSPIGELGDFAK
CCCHHHHHHHHHCCCEECCHHHHHHHCCCCCCCEEEEEECCCCEEEEECCCCCHHHHHHH
EYAESLHESLGHIAFIADRDTIIAVAGAPKKEFLNKPIGPAVERAMNERKTVLITATGEH
HHHHHHHHHHCCEEEEECCCEEEEEECCCHHHHHCCCCCHHHHHHHCCCCEEEEEECCCH
EYCKECITAEEGKCLFTSEIIAPIIAEGDPIGAVIIASREPGVKFGTLEQKMAETAAHFL
HHHHHHHCCCCCCEEEHHHHHHHHHCCCCCCEEEEEECCCCCCEECHHHHHHHHHHHHHH
AKQMEQ
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377; 8755877 [H]