| Definition | Carboxydothermus hydrogenoformans Z-2901 chromosome, complete genome. |
|---|---|
| Accession | NC_007503 |
| Length | 2,401,520 |
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The map label for this gene is rho [H]
Identifier: 78044086
GI number: 78044086
Start: 112782
End: 114059
Strand: Direct
Name: rho [H]
Synonym: CHY_0130
Alternate gene names: 78044086
Gene position: 112782-114059 (Clockwise)
Preceding gene: 78043547
Following gene: 78044660
Centisome position: 4.7
GC content: 47.26
Gene sequence:
>1278_bases TTGCTTACCAAGGAACAGCTGGAACAAAAGACCATAAAGGAGCTTTATGCCCTTGCCCGGGAACTGGAATTGCCCGGTTA TTACCGTTTGAAGAAGCAGGAGTTAGTGTTTGAATTAGCAAAAGTTTTTGCCCAAAAAGCCAAAGAGCAGGAACAAAAGG AAAGTTTATTGACGGCTTCCGGGGTACTGGAAGTTTTACCCGATGGCTACGGGTTTTTGCGCCCCTTCAAGTTTTTGCCC AGCCAGGACGATATTTACGTTTCACCATCGCAAATAAGAAAATTTGACTTAAGAACCGGCGACCAGGTGTTTGGGGTAAT AAGACCTCCCAAGGAAAACGAACGGTATTTTGCCCTGCTGCGGGTGGAGAAGGTAAACGGTAAGGAGCCCGAAACTTCCC CCGAAAGGCTCCACTTTGATGCGTTAACTCCCCTGTATCCCCAGGATCGGCTGTATTTGGAGACAGCGCCCGATGAGGTA TCGGCCCGGCTGATTGATTTGATTGCGCCGATAGGCAAAGGACAGAGGGGGTTAATCGTTGCTCCACCCAAAGCCGGAAA AACAGTTTTGTTAAAGCAGATTGCCAACAGTTTAATTAAAAATTATCCCGATCTTTACCTTATTGTCCTTCTAATTGATG AACGGCCGGAAGAGGTTACCGATATTGAACGGTCGGTCAAAGGGGAAGTGGTAAGTTCAACTTTTGATGAGCATCCGGAA AACCACGTTAAGGTAGCGGAAATGGTTCTGGAGCGGGCCAAGAGGCTTGTGGAACATAAATACGATGTGGTTATCTTATT GGACAGTATCACGCGGTTAGCCCGGGCCTATAACCTGGTTATTCCGCCCAGCGGCCGGACGCTATCCGGAGGGGTGGACC CGGCGGCCCTTTATAAACCCAAGTGGTTTTTTGGGGCTGCCCGGAATATTGAAGAAGGGGGAAGCCTGACCATACTGGCG ACGGCCCTGGTGGAAACGGGTAGCCGGATGGATGATGTTATTTTTGAAGAGTTTAAAGGTACCGGTAATATGGAACTAAT TTTAGATAGAAAATTAGCAGAAAGGCGAATTTTCCCGGCGGTGGACGTTCAGCGCTCCGGCACCAGAAAAGAAGAGCTTT TGTTTACTCCGGAAGAGTTGGAGTTTGCCTGGAAGCTTCGAAATGAACTTTCAAACCTTACTTCCCAGGATGCAGCGGAA TACTTAATTAATCTTATTAAAAAGACCAAGAGCAATGAAGAACTAATCGAACGCTATTTAAGGAAGAGTAGGTCATGA
Upstream 100 bases:
>100_bases TTTTTTGTTTCCCGGAAGAGTTTATTTGAAATTATTTATTAACAGTAACAAAAAATATAAGGGTTAGTATTGTCTACCTA TAAAAGGAGGAAGGGTTCTT
Downstream 100 bases:
>100_bases GAATAGTAGTTGCCCGGGAAAATGGCGAGTTTTTTGATTATCCCCTGCAGCCTGCCGGGCGCACGGGGAATTTCTTTACC CCCATTGAAAAGTCGGAATT
Product: transcription termination factor Rho
Products: NA
Alternate protein names: ATP-dependent helicase Rho [H]
Number of amino acids: Translated: 425; Mature: 425
Protein sequence:
>425_residues MLTKEQLEQKTIKELYALARELELPGYYRLKKQELVFELAKVFAQKAKEQEQKESLLTASGVLEVLPDGYGFLRPFKFLP SQDDIYVSPSQIRKFDLRTGDQVFGVIRPPKENERYFALLRVEKVNGKEPETSPERLHFDALTPLYPQDRLYLETAPDEV SARLIDLIAPIGKGQRGLIVAPPKAGKTVLLKQIANSLIKNYPDLYLIVLLIDERPEEVTDIERSVKGEVVSSTFDEHPE NHVKVAEMVLERAKRLVEHKYDVVILLDSITRLARAYNLVIPPSGRTLSGGVDPAALYKPKWFFGAARNIEEGGSLTILA TALVETGSRMDDVIFEEFKGTGNMELILDRKLAERRIFPAVDVQRSGTRKEELLFTPEELEFAWKLRNELSNLTSQDAAE YLINLIKKTKSNEELIERYLRKSRS
Sequences:
>Translated_425_residues MLTKEQLEQKTIKELYALARELELPGYYRLKKQELVFELAKVFAQKAKEQEQKESLLTASGVLEVLPDGYGFLRPFKFLP SQDDIYVSPSQIRKFDLRTGDQVFGVIRPPKENERYFALLRVEKVNGKEPETSPERLHFDALTPLYPQDRLYLETAPDEV SARLIDLIAPIGKGQRGLIVAPPKAGKTVLLKQIANSLIKNYPDLYLIVLLIDERPEEVTDIERSVKGEVVSSTFDEHPE NHVKVAEMVLERAKRLVEHKYDVVILLDSITRLARAYNLVIPPSGRTLSGGVDPAALYKPKWFFGAARNIEEGGSLTILA TALVETGSRMDDVIFEEFKGTGNMELILDRKLAERRIFPAVDVQRSGTRKEELLFTPEELEFAWKLRNELSNLTSQDAAE YLINLIKKTKSNEELIERYLRKSRS >Mature_425_residues MLTKEQLEQKTIKELYALARELELPGYYRLKKQELVFELAKVFAQKAKEQEQKESLLTASGVLEVLPDGYGFLRPFKFLP SQDDIYVSPSQIRKFDLRTGDQVFGVIRPPKENERYFALLRVEKVNGKEPETSPERLHFDALTPLYPQDRLYLETAPDEV SARLIDLIAPIGKGQRGLIVAPPKAGKTVLLKQIANSLIKNYPDLYLIVLLIDERPEEVTDIERSVKGEVVSSTFDEHPE NHVKVAEMVLERAKRLVEHKYDVVILLDSITRLARAYNLVIPPSGRTLSGGVDPAALYKPKWFFGAARNIEEGGSLTILA TALVETGSRMDDVIFEEFKGTGNMELILDRKLAERRIFPAVDVQRSGTRKEELLFTPEELEFAWKLRNELSNLTSQDAAE YLINLIKKTKSNEELIERYLRKSRS
Specific function: Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template [H]
COG id: COG1158
COG function: function code K; Transcription termination factor
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the Rho family [H]
Homologues:
Organism=Escherichia coli, GI1790217, Length=421, Percent_Identity=58.1947743467934, Blast_Score=488, Evalue=1e-139,
Paralogues:
None
Copy number: 300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000194 - InterPro: IPR003593 - InterPro: IPR011129 - InterPro: IPR012340 - InterPro: IPR011112 - InterPro: IPR011113 - InterPro: IPR004665 [H]
Pfam domain/function: PF00006 ATP-synt_ab; PF07498 Rho_N; PF07497 Rho_RNA_bind [H]
EC number: NA
Molecular weight: Translated: 48474; Mature: 48474
Theoretical pI: Translated: 5.93; Mature: 5.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTKEQLEQKTIKELYALARELELPGYYRLKKQELVFELAKVFAQKAKEQEQKESLLTAS CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GVLEVLPDGYGFLRPFKFLPSQDDIYVSPSQIRKFDLRTGDQVFGVIRPPKENERYFALL HHHHHCCCCCCHHHHHHCCCCCCCEEECHHHHHEECCCCCCCEEEEECCCCCCCCEEEEE RVEKVNGKEPETSPERLHFDALTPLYPQDRLYLETAPDEVSARLIDLIAPIGKGQRGLIV EEEECCCCCCCCCHHHEEECCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCEEE APPKAGKTVLLKQIANSLIKNYPDLYLIVLLIDERPEEVTDIERSVKGEVVSSTFDEHPE ECCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHCCC NHVKVAEMVLERAKRLVEHKYDVVILLDSITRLARAYNLVIPPSGRTLSGGVDPAALYKP HHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHEEEECCCCCCCCCCCCHHHHCCC KWFFGAARNIEEGGSLTILATALVETGSRMDDVIFEEFKGTGNMELILDRKLAERRIFPA CHHHHCCCCCCCCCCEEEEHHHHHHCCCHHHHHHHHHHCCCCCEEEEEEHHHHHHHCCCC VDVQRSGTRKEELLFTPEELEFAWKLRNELSNLTSQDAAEYLINLIKKTKSNEELIERYL CCCCCCCCCCHHEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH RKSRS HHCCC >Mature Secondary Structure MLTKEQLEQKTIKELYALARELELPGYYRLKKQELVFELAKVFAQKAKEQEQKESLLTAS CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GVLEVLPDGYGFLRPFKFLPSQDDIYVSPSQIRKFDLRTGDQVFGVIRPPKENERYFALL HHHHHCCCCCCHHHHHHCCCCCCCEEECHHHHHEECCCCCCCEEEEECCCCCCCCEEEEE RVEKVNGKEPETSPERLHFDALTPLYPQDRLYLETAPDEVSARLIDLIAPIGKGQRGLIV EEEECCCCCCCCCHHHEEECCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCEEE APPKAGKTVLLKQIANSLIKNYPDLYLIVLLIDERPEEVTDIERSVKGEVVSSTFDEHPE ECCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHCCC NHVKVAEMVLERAKRLVEHKYDVVILLDSITRLARAYNLVIPPSGRTLSGGVDPAALYKP HHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHEEEECCCCCCCCCCCCHHHHCCC KWFFGAARNIEEGGSLTILATALVETGSRMDDVIFEEFKGTGNMELILDRKLAERRIFPA CHHHHCCCCCCCCCCEEEEHHHHHHCCCHHHHHHHHHHCCCCCEEEEEEHHHHHHHCCCC VDVQRSGTRKEELLFTPEELEFAWKLRNELSNLTSQDAAEYLINLIKKTKSNEELIERYL CCCCCCCCCCHHEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH RKSRS HHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8423140; 9353933; 9384377 [H]