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The map label for this gene is yvrB [H]

Identifier: 78043778

GI number: 78043778

Start: 340442

End: 341407

Strand: Direct

Name: yvrB [H]

Synonym: CHY_0398

Alternate gene names: 78043778

Gene position: 340442-341407 (Clockwise)

Preceding gene: 78044935

Following gene: 78043241

Centisome position: 14.18

GC content: 41.51

Gene sequence:

>966_bases
ATGAAATCGTGGTGGGTAAAGTTATTTTTAGGAGGAGTTATTTTACTCCTCCTCCTTATTTTTGTTATATTGTTGGCGGC
AAACTTGGGAGCTGTGAAAATTCCGATAACGAAACTCTTTTTAGAACCGTATAAAACAATCTTTTTTAAGATAAGACTCC
CCCGGATAGCTTTGGGACTTACAGTGGGAGCAGCTCTCGGCCTGGCAGGTACGGTGTACCAGGGGGTATTGAAAACTCCT
TTAGCTGACCCGTATATTTTAGGAGTATCTTCAGGAGCTGCTGCAGCTGTAGCTTTACTAACTCTGCTAAAATCTTTTCC
TTATTATGCTTTGCCCTTAGGAGCGTTTTTAGGAAGTATAGTAGCGTTACTTTTAGTTTTTTTAATTTCCCGAAAACCCG
AACCTAATAGATTAATCCTTGCGGGAATTATTGTAAATAGCTTTTTAGGAGCTATCGTTACTTTTGTTTTAGCGGTAAGC
CGGGAAAATATGCACCAGATTATTTACTGGTTAATGGGAGGACTCAGTAATAAAGGATTTAAAGAAGCGGGAGTGCTTGG
CCTGTACCTTTTATTTGGGCTTGGTTTCCTTTTTATTTTTGCCCGGGATTTAAATGCTATGAGTTTTGGGGATGATACTG
CAGTTCAGTTAGGGGTGGAGGTTAACAAAAAAAGAGTTCTTTTTTTAATGCTGGCAAGTTTTTTAACGGCAGGAGCGGTC
AGCTTTTCCGGAACCATAGGGTTTGTTGGTCTGGTAGTTCCGCAGGTGGTAGAACTTATTTTTGGTAAGGATTTTCGCCT
TTTAATACCTTTATCAACCTTAGCGGGAGCTATCCTCCTGGTTTTTGCCGATGCTTTGGCCCGGAGCATTTTAGCCCCGG
CGGAGCTTCCGGTAGGGGTTATTACCGCTTTTATCGGTGCTCCCTTTTTTGCCTATCTTTTTATAAGGCGGGGTTATCAT
GCTTAA

Upstream 100 bases:

>100_bases
GCATTGATCCTAATTTAATTGTGCGACCGGGTCCCCGGACCATTGACGGGATTGAAAAATTAGCTAAAGCCCTTCATCCT
GGTTTAAAATAGGTGAGAAA

Downstream 100 bases:

>100_bases
AGGTCTTAATTTGGCCTACGGTTACGGCAACATCACCTTGTTTGAGGGGATAAATATTGAAGTCCACCCGGGCAAGTTTA
CTGTAATTATAGGCCCTAAT

Product: iron compound ABC transporter permease

Products: ADP; phosphate; iron dicitrate [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MKSWWVKLFLGGVILLLLLIFVILLAANLGAVKIPITKLFLEPYKTIFFKIRLPRIALGLTVGAALGLAGTVYQGVLKTP
LADPYILGVSSGAAAAVALLTLLKSFPYYALPLGAFLGSIVALLLVFLISRKPEPNRLILAGIIVNSFLGAIVTFVLAVS
RENMHQIIYWLMGGLSNKGFKEAGVLGLYLLFGLGFLFIFARDLNAMSFGDDTAVQLGVEVNKKRVLFLMLASFLTAGAV
SFSGTIGFVGLVVPQVVELIFGKDFRLLIPLSTLAGAILLVFADALARSILAPAELPVGVITAFIGAPFFAYLFIRRGYH
A

Sequences:

>Translated_321_residues
MKSWWVKLFLGGVILLLLLIFVILLAANLGAVKIPITKLFLEPYKTIFFKIRLPRIALGLTVGAALGLAGTVYQGVLKTP
LADPYILGVSSGAAAAVALLTLLKSFPYYALPLGAFLGSIVALLLVFLISRKPEPNRLILAGIIVNSFLGAIVTFVLAVS
RENMHQIIYWLMGGLSNKGFKEAGVLGLYLLFGLGFLFIFARDLNAMSFGDDTAVQLGVEVNKKRVLFLMLASFLTAGAV
SFSGTIGFVGLVVPQVVELIFGKDFRLLIPLSTLAGAILLVFADALARSILAPAELPVGVITAFIGAPFFAYLFIRRGYH
A
>Mature_321_residues
MKSWWVKLFLGGVILLLLLIFVILLAANLGAVKIPITKLFLEPYKTIFFKIRLPRIALGLTVGAALGLAGTVYQGVLKTP
LADPYILGVSSGAAAAVALLTLLKSFPYYALPLGAFLGSIVALLLVFLISRKPEPNRLILAGIIVNSFLGAIVTFVLAVS
RENMHQIIYWLMGGLSNKGFKEAGVLGLYLLFGLGFLFIFARDLNAMSFGDDTAVQLGVEVNKKRVLFLMLASFLTAGAV
SFSGTIGFVGLVVPQVVELIFGKDFRLLIPLSTLAGAILLVFADALARSILAPAELPVGVITAFIGAPFFAYLFIRRGYH
A

Specific function: Probably part of an ABC transporter complex. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790740, Length=300, Percent_Identity=38, Blast_Score=174, Evalue=7e-45,
Organism=Escherichia coli, GI1790741, Length=280, Percent_Identity=35.3571428571429, Blast_Score=154, Evalue=1e-38,
Organism=Escherichia coli, GI1788004, Length=284, Percent_Identity=35.9154929577465, Blast_Score=137, Evalue=9e-34,
Organism=Escherichia coli, GI1786347, Length=274, Percent_Identity=33.2116788321168, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1786805, Length=277, Percent_Identity=34.2960288808664, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1786804, Length=301, Percent_Identity=31.2292358803987, Blast_Score=102, Evalue=3e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000522 [H]

Pfam domain/function: PF01032 FecCD [H]

EC number: NA

Molecular weight: Translated: 34422; Mature: 34422

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSWWVKLFLGGVILLLLLIFVILLAANLGAVKIPITKLFLEPYKTIFFKIRLPRIALGL
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHEEECCHHHHHH
TVGAALGLAGTVYQGVLKTPLADPYILGVSSGAAAAVALLTLLKSFPYYALPLGAFLGSI
HHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
VALLLVFLISRKPEPNRLILAGIIVNSFLGAIVTFVLAVSRENMHQIIYWLMGGLSNKGF
HHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
KEAGVLGLYLLFGLGFLFIFARDLNAMSFGDDTAVQLGVEVNKKRVLFLMLASFLTAGAV
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCH
SFSGTIGFVGLVVPQVVELIFGKDFRLLIPLSTLAGAILLVFADALARSILAPAELPVGV
HHCCHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
ITAFIGAPFFAYLFIRRGYHA
HHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKSWWVKLFLGGVILLLLLIFVILLAANLGAVKIPITKLFLEPYKTIFFKIRLPRIALGL
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHEEECCHHHHHH
TVGAALGLAGTVYQGVLKTPLADPYILGVSSGAAAAVALLTLLKSFPYYALPLGAFLGSI
HHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
VALLLVFLISRKPEPNRLILAGIIVNSFLGAIVTFVLAVSRENMHQIIYWLMGGLSNKGF
HHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
KEAGVLGLYLLFGLGFLFIFARDLNAMSFGDDTAVQLGVEVNKKRVLFLMLASFLTAGAV
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCH
SFSGTIGFVGLVVPQVVELIFGKDFRLLIPLSTLAGAILLVFADALARSILAPAELPVGV
HHCCHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
ITAFIGAPFFAYLFIRRGYHA
HHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; iron dicitrate [Periplasm]; H2O [C]

Specific reaction: ATP + iron dicitrate [Periplasm] + H2O = ADP + phosphate + iron dicitrate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]