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The map label for this gene is 78043758

Identifier: 78043758

GI number: 78043758

Start: 434277

End: 434669

Strand: Direct

Name: 78043758

Synonym: CHY_0500

Alternate gene names: NA

Gene position: 434277-434669 (Clockwise)

Preceding gene: 78042976

Following gene: 78044502

Centisome position: 18.08

GC content: 40.46

Gene sequence:

>393_bases
GTGGAGATAGTGCTGCGGCCGATTGGCTACGTGCGTAACAGCTTTAATTCCAAAGAAAAAATGGATTACGATGAGGATAT
TTCGGAAATTGTAGTCTATGAGGAATTTGTTCCGGGGCTTTACAGGATTGAAGACGAAGAGTACATAACTATTATTTTTT
ATTTTCATTTAAGCAATGAAGAAAAACTCATTACTGTTAGAAGAGACGGCAAGGAAACCGGGGTTTTTGCCTCGAGAAGT
CCCAATCGTCCCAATCATTTAGGGATTGCCACCGGAAGGCTTTTAAAACGGGAAGGAAATGTCTTAACTGTAAAGGGAAT
TGACTGCTTAAACCAAACACCTGTTTTAGACATTAAGCCTAAAAGCCGGAAATTTGACGGGGTGGATGGTTAA

Upstream 100 bases:

>100_bases
TTCTTTTTTTAGGCGTATAAACGCAAATATAAGAACCGTTCCTTTTTTGCTTTATCTTTTTGCGGAAGTGGTGTATTTTA
GGGGTAGGGGGTGTAAAAAG

Downstream 100 bases:

>100_bases
ATGGTGGAGTTTGTTTTTCTCGGAGATTCTTTAACTTACGGTTTTCCCTATGGACCTACCGCTTCCTGGGTAAATCTTAG
TGCAGAAAAACTTGGAGTAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 130; Mature: 130

Protein sequence:

>130_residues
MEIVLRPIGYVRNSFNSKEKMDYDEDISEIVVYEEFVPGLYRIEDEEYITIIFYFHLSNEEKLITVRRDGKETGVFASRS
PNRPNHLGIATGRLLKREGNVLTVKGIDCLNQTPVLDIKPKSRKFDGVDG

Sequences:

>Translated_130_residues
MEIVLRPIGYVRNSFNSKEKMDYDEDISEIVVYEEFVPGLYRIEDEEYITIIFYFHLSNEEKLITVRRDGKETGVFASRS
PNRPNHLGIATGRLLKREGNVLTVKGIDCLNQTPVLDIKPKSRKFDGVDG
>Mature_130_residues
MEIVLRPIGYVRNSFNSKEKMDYDEDISEIVVYEEFVPGLYRIEDEEYITIIFYFHLSNEEKLITVRRDGKETGVFASRS
PNRPNHLGIATGRLLKREGNVLTVKGIDCLNQTPVLDIKPKSRKFDGVDG

Specific function: Unknown

COG id: COG1720

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0066 (virR) family [H]

Homologues:

Organism=Homo sapiens, GI118600979, Length=137, Percent_Identity=32.1167883211679, Blast_Score=78, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24586408, Length=135, Percent_Identity=29.6296296296296, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI45552503, Length=135, Percent_Identity=29.6296296296296, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003814
- InterPro:   IPR018316
- InterPro:   IPR001378 [H]

Pfam domain/function: PF02663 FwdE; PF01980 UPF0066 [H]

EC number: NA

Molecular weight: Translated: 14968; Mature: 14968

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: PS01318 UPF0066

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIVLRPIGYVRNSFNSKEKMDYDEDISEIVVYEEFVPGLYRIEDEEYITIIFYFHLSNE
CEEEECCHHHHHCCCCCCCCCCCCCCHHHEEHHHHHCCCEEEECCCCEEEEEEEEEECCC
EKLITVRRDGKETGVFASRSPNRPNHLGIATGRLLKREGNVLTVKGIDCLNQTPVLDIKP
CEEEEEECCCCCCCEEECCCCCCCCEEEEECCEEEECCCCEEEEECCCCCCCCCEEEECC
KSRKFDGVDG
CCCCCCCCCC
>Mature Secondary Structure
MEIVLRPIGYVRNSFNSKEKMDYDEDISEIVVYEEFVPGLYRIEDEEYITIIFYFHLSNE
CEEEECCHHHHHCCCCCCCCCCCCCCHHHEEHHHHHCCCEEEECCCCEEEEEEEEEECCC
EKLITVRRDGKETGVFASRSPNRPNHLGIATGRLLKREGNVLTVKGIDCLNQTPVLDIKP
CEEEEEECCCCCCCEEECCCCCCCCEEEEECCEEEECCCCEEEEECCCCCCCCCEEEECC
KSRKFDGVDG
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]