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The map label for this gene is pdtaR [H]

Identifier: 78043628

GI number: 78043628

Start: 617815

End: 618402

Strand: Direct

Name: pdtaR [H]

Synonym: CHY_0703

Alternate gene names: 78043628

Gene position: 617815-618402 (Clockwise)

Preceding gene: 78043051

Following gene: 78042986

Centisome position: 25.73

GC content: 41.84

Gene sequence:

>588_bases
ATGTTTGGTGCAACTGTGATTATTGCTTCCGCGGACAGCAATTTTCGGCAAATGGTCAAATCAGCGGTTAAAAATCTCGA
CTACATTGTGGTGGGCGAGTGCGCTGATGGGCCGACCGCTCTAAAAATGGCCCGGAATTTTCAACCGGATATGTTTATCA
TTGATGATCACCTGATAGGTGTTCCTGGCCGGGAGATTGCTAAAATCCTGTCTTTTGACCGCCAGTGTGCGGTAGTTTTA
GCTATGGAGTTTGAAATTGATAAACTCGATGAGTTTTTAGGAGAAATGGGTGTGGTTGGGGTTGTGATTAAACCCTTAGA
AGAAGAACAGTTAATCATGACCGTCCAGGTGACCGAACATAATTACCAGCGGATTAAAGAATTAGAAAAAGAAATTGAAA
GTTTAAAGGATGCCTTAGAAACCAGAAAGCTTGTGGAAAAAGCTAAAGGAATTTTAATGGAAAGCTTGGGGATTTCCGAA
AAAGAAGCGTTTAGGAAGATTCAAAAGCAAAGCATGGATAAACGGATTTCCATGCGGGCGGTGGCGGAAGCCATCATCTT
AGCGTATGACGTTAATCAAAAAAAATAA

Upstream 100 bases:

>100_bases
GAAATGCATAGTTGGGCACAAGGGTGTGTCCGCTTCCTAAGTTAGCTGGCAATGGTGCCTTATTTAAGGCGCCATTTTCT
ATTTTTGGGACGGTGACAGA

Downstream 100 bases:

>100_bases
AGGGGGATTTTGGATGAGTTACACCAAAAACGATATTATGGATATGGTGCGGGAGCAAAATGTTAAGTTTATCCGGCTCC
AGTTTACCGACATTTTTGGG

Product: response regulator/ANTAR domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 195

Protein sequence:

>195_residues
MFGATVIIASADSNFRQMVKSAVKNLDYIVVGECADGPTALKMARNFQPDMFIIDDHLIGVPGREIAKILSFDRQCAVVL
AMEFEIDKLDEFLGEMGVVGVVIKPLEEEQLIMTVQVTEHNYQRIKELEKEIESLKDALETRKLVEKAKGILMESLGISE
KEAFRKIQKQSMDKRISMRAVAEAIILAYDVNQKK

Sequences:

>Translated_195_residues
MFGATVIIASADSNFRQMVKSAVKNLDYIVVGECADGPTALKMARNFQPDMFIIDDHLIGVPGREIAKILSFDRQCAVVL
AMEFEIDKLDEFLGEMGVVGVVIKPLEEEQLIMTVQVTEHNYQRIKELEKEIESLKDALETRKLVEKAKGILMESLGISE
KEAFRKIQKQSMDKRISMRAVAEAIILAYDVNQKK
>Mature_195_residues
MFGATVIIASADSNFRQMVKSAVKNLDYIVVGECADGPTALKMARNFQPDMFIIDDHLIGVPGREIAKILSFDRQCAVVL
AMEFEIDKLDEFLGEMGVVGVVIKPLEEEQLIMTVQVTEHNYQRIKELEKEIESLKDALETRKLVEKAKGILMESLGISE
KEAFRKIQKQSMDKRISMRAVAEAIILAYDVNQKK

Specific function: Member of the two-component regulatory system pdtaR/pdtaS [H]

COG id: COG3707

COG function: function code T; Response regulator with putative antiterminator output domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005561
- InterPro:   IPR011006
- InterPro:   IPR008327
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03861 ANTAR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 21980; Mature: 21980

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: PS50921 ANTAR ; PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFGATVIIASADSNFRQMVKSAVKNLDYIVVGECADGPTALKMARNFQPDMFIIDDHLIG
CCCCEEEEEECCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCCEEEECCCEEC
VPGREIAKILSFDRQCAVVLAMEFEIDKLDEFLGEMGVVGVVIKPLEEEQLIMTVQVTEH
CCHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHCCCHHHEECCCCCCEEEEEEEECCC
NYQRIKELEKEIESLKDALETRKLVEKAKGILMESLGISEKEAFRKIQKQSMDKRISMRA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
VAEAIILAYDVNQKK
HHHHHHHHCCCCCCC
>Mature Secondary Structure
MFGATVIIASADSNFRQMVKSAVKNLDYIVVGECADGPTALKMARNFQPDMFIIDDHLIG
CCCCEEEEEECCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCCEEEECCCEEC
VPGREIAKILSFDRQCAVVLAMEFEIDKLDEFLGEMGVVGVVIKPLEEEQLIMTVQVTEH
CCHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHCCCHHHEECCCCCCEEEEEEEECCC
NYQRIKELEKEIESLKDALETRKLVEKAKGILMESLGISEKEAFRKIQKQSMDKRISMRA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
VAEAIILAYDVNQKK
HHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]