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The map label for this gene is yrrO [H]

Identifier: 78042678

GI number: 78042678

Start: 477217

End: 478428

Strand: Direct

Name: yrrO [H]

Synonym: CHY_0548

Alternate gene names: 78042678

Gene position: 477217-478428 (Clockwise)

Preceding gene: 78043384

Following gene: 78043140

Centisome position: 19.87

GC content: 44.64

Gene sequence:

>1212_bases
ATGAACTACGAGATTTTAGCTCCGGCAGGAAATTTGGAAAAACTTATTTTTGCCTTTGTCTATGGTGCCGATGCTGCTTA
TTTAGCCGGACCAAAATACGGTCTTCGGGCCCGAGCCGGAAATTTTACCTGGGAAGAATTAAAAAAAGCCCGGGAAATAG
CCCGGGAGCTCAACCGTAAAATTTATATTACCATTAACATTTTTGCCCATAATAAAGATCTTGAAGAACTTCCGGACTAT
CTGGAGTATTTAAATAAGATAAAGCCGGACGGGGTAATTGTGGCCGATCCGGGGGTTTTTCGCCTGGTAAAAAGGTATCT
TCCGGAGATACCAATCCACATCAGCACCCAGGCCAATACTACCAATATTGAAGCTGTAAAATTCTGGGAAGAGCTGGGGG
CCAAAAGGATAGTTTTAGCGCGGGAGCTAACTCTGGAGGAGATTGCCGAAATTCGTCAAAATACGGCAATGGAACTGGAA
ATGTTTGTTCATGGCGCCATGTGCATTTCCTACTCCGGAAGGTGTCTTTTAAGCAGTTACCTTACCGGACGGGATGCCAA
CCTGGGGGATTGTGCCCAGGTTTGCCGCTGGCCTTTTCATCTCTATGAAGAAAAAGCTCCCGGTCAGTTTTTTCCCATTG
AAGAAGACGAGCGGGGAAGCTATATTTTTAACTCTTATGATCTTTCTTTAATCGAAGACCTGCCGAAATTGGTGGAAATT
GGGATAAATAGCTTTAAAATCGAAGGACGGATGAAATCGGTTCATTATGTGGCAACTACGGCGCGAATTTATAAAGAAGC
TTTAACCCTGGCTTTAGAAGGGAAAACTCTCTCACCGGAAAAGCAGAACGAACTTTTAAAAATACGCCACCGGCCTTACA
ATAAAGGCTTTTTGTACGGAAAACCGCAGCAGGGAAGGGTGGATGAAAAAAATTATACCCTGGAATACGAATTTGTGGGC
ATCGTTTGGGGCTTTCAAGATGGCTTAAATTATGCGGAGCAGCGGGGAAAGATTGAAAAGGGAGATTATCTGGAAATCTT
TACCCCCGACGGCCTAACGGTAAGGGGGATAGCGCAAAAACTTTATGATGAAGAACAAAGGGAAATTCCTTCAACTCCCC
ATCCGCAGATGCGCTTTTATTTTGCAGGGTTTCCGCCGCTCCCGAAATACAGTTTAATTCGCAAGGTTCCCAGGGGGGTT
TACAATGAGTGA

Upstream 100 bases:

>100_bases
TTTTTTATGTAGCCCGACCGGATGGTTATCATGCTTTTGCCAGAACTTATCAAGAGCATTTGCAAAACGTAAAAAAATAT
CTGCCTTAAGGAGGCAGTTT

Downstream 100 bases:

>100_bases
AAAAGAAATGGTGCTCGTTGAGGTAAACCCGAGCGAAATTGTTTATCTGGACTTTCTTTTAGAAGGGTTTAATGGCCTTG
GCATTGGGCATACCCTTGAT

Product: U32 family peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 403; Mature: 403

Protein sequence:

>403_residues
MNYEILAPAGNLEKLIFAFVYGADAAYLAGPKYGLRARAGNFTWEELKKAREIARELNRKIYITINIFAHNKDLEELPDY
LEYLNKIKPDGVIVADPGVFRLVKRYLPEIPIHISTQANTTNIEAVKFWEELGAKRIVLARELTLEEIAEIRQNTAMELE
MFVHGAMCISYSGRCLLSSYLTGRDANLGDCAQVCRWPFHLYEEKAPGQFFPIEEDERGSYIFNSYDLSLIEDLPKLVEI
GINSFKIEGRMKSVHYVATTARIYKEALTLALEGKTLSPEKQNELLKIRHRPYNKGFLYGKPQQGRVDEKNYTLEYEFVG
IVWGFQDGLNYAEQRGKIEKGDYLEIFTPDGLTVRGIAQKLYDEEQREIPSTPHPQMRFYFAGFPPLPKYSLIRKVPRGV
YNE

Sequences:

>Translated_403_residues
MNYEILAPAGNLEKLIFAFVYGADAAYLAGPKYGLRARAGNFTWEELKKAREIARELNRKIYITINIFAHNKDLEELPDY
LEYLNKIKPDGVIVADPGVFRLVKRYLPEIPIHISTQANTTNIEAVKFWEELGAKRIVLARELTLEEIAEIRQNTAMELE
MFVHGAMCISYSGRCLLSSYLTGRDANLGDCAQVCRWPFHLYEEKAPGQFFPIEEDERGSYIFNSYDLSLIEDLPKLVEI
GINSFKIEGRMKSVHYVATTARIYKEALTLALEGKTLSPEKQNELLKIRHRPYNKGFLYGKPQQGRVDEKNYTLEYEFVG
IVWGFQDGLNYAEQRGKIEKGDYLEIFTPDGLTVRGIAQKLYDEEQREIPSTPHPQMRFYFAGFPPLPKYSLIRKVPRGV
YNE
>Mature_403_residues
MNYEILAPAGNLEKLIFAFVYGADAAYLAGPKYGLRARAGNFTWEELKKAREIARELNRKIYITINIFAHNKDLEELPDY
LEYLNKIKPDGVIVADPGVFRLVKRYLPEIPIHISTQANTTNIEAVKFWEELGAKRIVLARELTLEEIAEIRQNTAMELE
MFVHGAMCISYSGRCLLSSYLTGRDANLGDCAQVCRWPFHLYEEKAPGQFFPIEEDERGSYIFNSYDLSLIEDLPKLVEI
GINSFKIEGRMKSVHYVATTARIYKEALTLALEGKTLSPEKQNELLKIRHRPYNKGFLYGKPQQGRVDEKNYTLEYEFVG
IVWGFQDGLNYAEQRGKIEKGDYLEIFTPDGLTVRGIAQKLYDEEQREIPSTPHPQMRFYFAGFPPLPKYSLIRKVPRGV
YNE

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI1788397, Length=395, Percent_Identity=38.7341772151899, Blast_Score=260, Evalue=1e-70,
Organism=Escherichia coli, GI87081910, Length=270, Percent_Identity=35.5555555555556, Blast_Score=177, Evalue=9e-46,
Organism=Escherichia coli, GI1789548, Length=294, Percent_Identity=33.6734693877551, Blast_Score=140, Evalue=1e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR001539 [H]

Pfam domain/function: PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 46381; Mature: 46381

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: PS01276 PEPTIDASE_U32

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYEILAPAGNLEKLIFAFVYGADAAYLAGPKYGLRARAGNFTWEELKKAREIARELNRK
CCEEEECCCCCHHHHHHHHHHCCCCCEECCCCCCCEECCCCCCHHHHHHHHHHHHHCCCE
IYITINIFAHNKDLEELPDYLEYLNKIKPDGVIVADPGVFRLVKRYLPEIPIHISTQANT
EEEEEEEEEECCCHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHCCCCCEEEECCCCC
TNIEAVKFWEELGAKRIVLARELTLEEIAEIRQNTAMELEMFVHGAMCISYSGRCLLSSY
CCHHHHHHHHHHCCCEEEEEHHCCHHHHHHHHHCCHHEEHHHHHHHHEEECCCHHHHHHH
LTGRDANLGDCAQVCRWPFHLYEEKAPGQFFPIEEDERGSYIFNSYDLSLIEDLPKLVEI
HCCCCCCHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHH
GINSFKIEGRMKSVHYVATTARIYKEALTLALEGKTLSPEKQNELLKIRHRPYNKGFLYG
CCCEEEECCCCCEEEHHHHHHHHHHHHHHEEECCCCCCCHHHCCHHEEECCCCCCCEEEC
KPQQGRVDEKNYTLEYEFVGIVWGFQDGLNYAEQRGKIEKGDYLEIFTPDGLTVRGIAQK
CCCCCCCCCCCEEEEEEEEEEEEECHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHH
LYDEEQREIPSTPHPQMRFYFAGFPPLPKYSLIRKVPRGVYNE
HHCHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNYEILAPAGNLEKLIFAFVYGADAAYLAGPKYGLRARAGNFTWEELKKAREIARELNRK
CCEEEECCCCCHHHHHHHHHHCCCCCEECCCCCCCEECCCCCCHHHHHHHHHHHHHCCCE
IYITINIFAHNKDLEELPDYLEYLNKIKPDGVIVADPGVFRLVKRYLPEIPIHISTQANT
EEEEEEEEEECCCHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHCCCCCEEEECCCCC
TNIEAVKFWEELGAKRIVLARELTLEEIAEIRQNTAMELEMFVHGAMCISYSGRCLLSSY
CCHHHHHHHHHHCCCEEEEEHHCCHHHHHHHHHCCHHEEHHHHHHHHEEECCCHHHHHHH
LTGRDANLGDCAQVCRWPFHLYEEKAPGQFFPIEEDERGSYIFNSYDLSLIEDLPKLVEI
HCCCCCCHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHH
GINSFKIEGRMKSVHYVATTARIYKEALTLALEGKTLSPEKQNELLKIRHRPYNKGFLYG
CCCEEEECCCCCEEEHHHHHHHHHHHHHHEEECCCCCCCHHHCCHHEEECCCCCCCEEEC
KPQQGRVDEKNYTLEYEFVGIVWGFQDGLNYAEQRGKIEKGDYLEIFTPDGLTVRGIAQK
CCCCCCCCCCCEEEEEEEEEEEEECHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHH
LYDEEQREIPSTPHPQMRFYFAGFPPLPKYSLIRKVPRGVYNE
HHCHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]