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The map label for this gene is radC [C]

Identifier: 78042658

GI number: 78042658

Start: 296638

End: 297318

Strand: Direct

Name: radC [C]

Synonym: CHY_0341

Alternate gene names: 78042658

Gene position: 296638-297318 (Clockwise)

Preceding gene: 78045150

Following gene: 78044889

Centisome position: 12.35

GC content: 45.08

Gene sequence:

>681_bases
ATGGGGGAGAAAATTAAAAACCTGCCGGAAGAGCTAAGACCCCGGGAGCGGCTTTTACGCCATGGACCGGAAAGTTTAAA
CCCGGCGGAGCTCCTGGCGGTGCTCCTTGGAAGCGGTACGCCCCAGGAAAACGCTCTGGAATTGGCGTTACGGCTTTTAA
CTACTTTTGGCGGGTTAAAGGGGCTAATAGAGGTGCATCCCGAACAGTTAAAAAGCTTTAAAGGAATTGGCCAGGCCAAA
GCAGCAAAACTTTTAGCGGCTTTGGAATTAGCCCGGCGCTATTATGAGCTCACCGGTGAAAATAAGCTAAATTTTTTAAA
TCCCGATGATGTGTATAATTATCTAAGATACAAAATAGGCCACAAAAAGCAGGAACAAGTGGTGGTGTTATATTTAAATA
CCAAAAACCAGCTTTGTGGTGAAAATATAGTTGCCATTGGCGGCGTAAATCATGCGGGGGTGTCGCCGGGAGATATTTTT
CGGGAAGCGGTGAAAATTGGTGCCTATGCGGTAATTATTGCCCATAATCATCCCAGCGGCGACCCGACTCCCAGCAAAGA
AGACATAGATTTTACCGGCCGGGTGAAAAAGGCGTCCGAAATTTTAGGAATTAAACTCTTAGATCATATAATTCTCGGAG
AAAATAAATATATCAGTATGAAAGCCGAGCGGTTATTTTAG

Upstream 100 bases:

>100_bases
AAGGTGCTCTTTTTGTGGCAAAAATTGAAGGATGTTATTTTAATGTGGTGGGGCTTCCGGTGGCCCGATTGTATCGTGAG
CTTAGAGAGTGGGGATATTA

Downstream 100 bases:

>100_bases
AAAGGGGAAGTTAAGATGGCCTTTAAATTTGGATTGGTAGCAAAGGATTTAGGCATTGACCTGGGAACTGCCAACTCTCT
TGTATACGTAAAAGGGCGGG

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 225

Protein sequence:

>226_residues
MGEKIKNLPEELRPRERLLRHGPESLNPAELLAVLLGSGTPQENALELALRLLTTFGGLKGLIEVHPEQLKSFKGIGQAK
AAKLLAALELARRYYELTGENKLNFLNPDDVYNYLRYKIGHKKQEQVVVLYLNTKNQLCGENIVAIGGVNHAGVSPGDIF
REAVKIGAYAVIIAHNHPSGDPTPSKEDIDFTGRVKKASEILGIKLLDHIILGENKYISMKAERLF

Sequences:

>Translated_226_residues
MGEKIKNLPEELRPRERLLRHGPESLNPAELLAVLLGSGTPQENALELALRLLTTFGGLKGLIEVHPEQLKSFKGIGQAK
AAKLLAALELARRYYELTGENKLNFLNPDDVYNYLRYKIGHKKQEQVVVLYLNTKNQLCGENIVAIGGVNHAGVSPGDIF
REAVKIGAYAVIIAHNHPSGDPTPSKEDIDFTGRVKKASEILGIKLLDHIILGENKYISMKAERLF
>Mature_225_residues
GEKIKNLPEELRPRERLLRHGPESLNPAELLAVLLGSGTPQENALELALRLLTTFGGLKGLIEVHPEQLKSFKGIGQAKA
AKLLAALELARRYYELTGENKLNFLNPDDVYNYLRYKIGHKKQEQVVVLYLNTKNQLCGENIVAIGGVNHAGVSPGDIFR
EAVKIGAYAVIIAHNHPSGDPTPSKEDIDFTGRVKKASEILGIKLLDHIILGENKYISMKAERLF

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family

Homologues:

Organism=Escherichia coli, GI87082300, Length=220, Percent_Identity=38.6363636363636, Blast_Score=158, Evalue=3e-40,
Organism=Escherichia coli, GI1788997, Length=134, Percent_Identity=34.3283582089552, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI2367100, Length=116, Percent_Identity=34.4827586206897, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1788312, Length=116, Percent_Identity=35.3448275862069, Blast_Score=79, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y341_CARHZ (Q3AF80)

Other databases:

- EMBL:   CP000141
- RefSeq:   YP_359204.1
- ProteinModelPortal:   Q3AF80
- SMR:   Q3AF80
- STRING:   Q3AF80
- GeneID:   3726322
- GenomeReviews:   CP000141_GR
- KEGG:   chy:CHY_0341
- NMPDR:   fig|246194.3.peg.457
- TIGR:   CHY_0341
- eggNOG:   COG2003
- HOGENOM:   HBG751042
- OMA:   LDHLILG
- BioCyc:   CHYD246194:CHY_0341-MONOMER
- InterPro:   IPR003583
- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891
- SMART:   SM00278
- TIGRFAMs:   TIGR00608

Pfam domain/function: PF04002 DUF2466; SSF47781 RuvA_2_like

EC number: NA

Molecular weight: Translated: 25010; Mature: 24879

Theoretical pI: Translated: 9.20; Mature: 9.20

Prosite motif: PS01302 UPF0758

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGEKIKNLPEELRPRERLLRHGPESLNPAELLAVLLGSGTPQENALELALRLLTTFGGLK
CCCHHHCCHHHCCHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
GLIEVHPEQLKSFKGIGQAKAAKLLAALELARRYYELTGENKLNFLNPDDVYNYLRYKIG
HHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHC
HKKQEQVVVLYLNTKNQLCGENIVAIGGVNHAGVSPGDIFREAVKIGAYAVIIAHNHPSG
CCCCCCEEEEEECCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCEEEEEEEECCCCC
DPTPSKEDIDFTGRVKKASEILGIKLLDHIILGENKYISMKAERLF
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHCC
>Mature Secondary Structure 
GEKIKNLPEELRPRERLLRHGPESLNPAELLAVLLGSGTPQENALELALRLLTTFGGLK
CCHHHCCHHHCCHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
GLIEVHPEQLKSFKGIGQAKAAKLLAALELARRYYELTGENKLNFLNPDDVYNYLRYKIG
HHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHC
HKKQEQVVVLYLNTKNQLCGENIVAIGGVNHAGVSPGDIFREAVKIGAYAVIIAHNHPSG
CCCCCCEEEEEECCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCEEEEEEEECCCCC
DPTPSKEDIDFTGRVKKASEILGIKLLDHIILGENKYISMKAERLF
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA