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The map label for this gene is 78042626

Identifier: 78042626

GI number: 78042626

Start: 124319

End: 124846

Strand: Direct

Name: 78042626

Synonym: CHY_0143

Alternate gene names: NA

Gene position: 124319-124846 (Clockwise)

Preceding gene: 78044668

Following gene: 78043023

Centisome position: 5.18

GC content: 44.89

Gene sequence:

>528_bases
ATGGATCGGTTTTTAGAAAAGTGGCAGAAAGCAAGAAAAAGCCGGGAAGGGATGGAAGAACTTCTTAATTACCTGCGTCC
ACTCATTAAAAAGGCAGCTCAACGTTATCGCAATCCCTATCTAACCGAGGAAGACCTTATGCAGGAAGGGATGATTGCGG
TAATCGAAAGTGTTTACCGCTTTGACCCCGAGCGGGGGGTTTATTTTTTAAAGTACGTCCGGGAGATGGTGTATGGTAGG
ATTTATTCCCTGTTGCGGGCGGAAAAGGCCAGAAGGGGTAAGGAAGTGCCGTTAGAGGAATACCATATTGAGGTGCAGCA
TTTTGCCGAGGAACTGCCGACGATTAACTTTCCTCCGGGGGTTTTAACGCCCCGCCAGGAAAGCTTGATAACTTTAAAAT
ACGAACGGGGAATTTCCCTGAGTGAAGTGGCGAAGATTTTAAAAATTACCCCGGCCGGTGCCTATGATTTGGAAAAACGG
GCTCTTAATAAATTAAAAAAATACTACCTCTCCTTAAAAACCAAATAA

Upstream 100 bases:

>100_bases
CCTTGGCAAAAGGCGGTTTTTTTCTTTTTAGAGGCTTTTTGCTATTCTTTTCCCGGCGCTAAAAACGAAAAGCCCGGGCT
TTAACCAAAGGGGGCTTTTT

Downstream 100 bases:

>100_bases
ATGGACTGCACTTTTTTTGATGTCAGCCGGCTGAACGCTAATAGAAGGGAGGAATTTTTATGGCGGTGATTGCCAACAAG
GTGGACACGGTATTGCGGCT

Product: RNA polymerase sigma-70 factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 175

Protein sequence:

>175_residues
MDRFLEKWQKARKSREGMEELLNYLRPLIKKAAQRYRNPYLTEEDLMQEGMIAVIESVYRFDPERGVYFLKYVREMVYGR
IYSLLRAEKARRGKEVPLEEYHIEVQHFAEELPTINFPPGVLTPRQESLITLKYERGISLSEVAKILKITPAGAYDLEKR
ALNKLKKYYLSLKTK

Sequences:

>Translated_175_residues
MDRFLEKWQKARKSREGMEELLNYLRPLIKKAAQRYRNPYLTEEDLMQEGMIAVIESVYRFDPERGVYFLKYVREMVYGR
IYSLLRAEKARRGKEVPLEEYHIEVQHFAEELPTINFPPGVLTPRQESLITLKYERGISLSEVAKILKITPAGAYDLEKR
ALNKLKKYYLSLKTK
>Mature_175_residues
MDRFLEKWQKARKSREGMEELLNYLRPLIKKAAQRYRNPYLTEEDLMQEGMIAVIESVYRFDPERGVYFLKYVREMVYGR
IYSLLRAEKARRGKEVPLEEYHIEVQHFAEELPTINFPPGVLTPRQESLITLKYERGISLSEVAKILKITPAGAYDLEKR
ALNKLKKYYLSLKTK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20781; Mature: 20781

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRFLEKWQKARKSREGMEELLNYLRPLIKKAAQRYRNPYLTEEDLMQEGMIAVIESVYR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
FDPERGVYFLKYVREMVYGRIYSLLRAEKARRGKEVPLEEYHIEVQHFAEELPTINFPPG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
VLTPRQESLITLKYERGISLSEVAKILKITPAGAYDLEKRALNKLKKYYLSLKTK
CCCCCCCCEEEEHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDRFLEKWQKARKSREGMEELLNYLRPLIKKAAQRYRNPYLTEEDLMQEGMIAVIESVYR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
FDPERGVYFLKYVREMVYGRIYSLLRAEKARRGKEVPLEEYHIEVQHFAEELPTINFPPG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
VLTPRQESLITLKYERGISLSEVAKILKITPAGAYDLEKRALNKLKKYYLSLKTK
CCCCCCCCEEEEHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA