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The map label for this gene is lsrB [H]

Identifier: 77465738

GI number: 77465738

Start: 857694

End: 858740

Strand: Direct

Name: lsrB [H]

Synonym: RSP_3732

Alternate gene names: 77465738

Gene position: 857694-858740 (Clockwise)

Preceding gene: 77465736

Following gene: 77465739

Centisome position: 90.95

GC content: 64.95

Gene sequence:

>1047_bases
ATGAAGATCATGCTGACGTCAGCGGCGCTGGCGCTGTCGGTTCTGGCGGCCCCCGCCGTGGCTCAGGACATCGTCGACGT
GTCCAAGGTCAACAAGGACCTGATCGCGACGAAGGACGGCAAGGAATATTCCATCGCCACCGTCGTGAAGGTGGACGGCA
TCGCCTGGTTCGACCGGATGCGCGACGGGATCACCCAGTTCCAGAAGGACACCGGCCACGACGTCTGGATGGTGGGCCCG
AGCCAGGCCGACGCGGCGGCGCAGGTGCAGCTGATCGAGAACCTGATCGCGCAGGGCGTGGATGCGATCTGCGTGGTGCC
CTTCTCGGTCGAGGCGGTGGAGCCCGTGCTGAAGAAGGCGCGCGACCGGGGCATCGTGGTCATCACCCACGAGGCGTCGA
ACATCCAGAACACCGACTTCGACCTCGAGGCCTTCGACAACCTCGCCTATGGCGCGAACCTGATGAAGGAACTCGCCAAA
TCCATGGGCGAGAAGGGCAAATACGTCGCCACCGTCGGCTCGCTCACCTCGAAGAGCCAGATGGAATGGATCGACGGCGC
GGTGGCCTACCAGAAGGAGCATTACCCCGAGATGAGCCTCGTGGGCGACCGTCTGGAGACCGCCGACGACGCGGCCATCG
ACTATACCAAGCTCAAGGAAGCGATGACCACCTATCCCGACATCACGGGGATCCTCGGCGCGCCGATGCCGACCTCGGCC
GGGGCCGGTCGCCTGATCGCCGAGAGCGGGCTGAAGGACAAGGTCTTCTTCGCGGGCACGGGCCTGCCGTCGGTCGCGGG
CGAATATCTGCAGAACGGCGACATCCAGTATATCCAGTTCTGGGATCCGGCGGTCGCGGGCTATGCGATGAACATGCTGG
CCGTGGCGGCCCTCGAGGGCAAGAAGGACGAGATCAAGCCGGGCCTGAACCTCGGCCTCGCGGGCTACGAGGAGCTGACC
GCGCCGGACGCGGCCAACCCGCATCTGCTCTATGGCGCAGGCTGGGTCGGCGTGACCAAGGACAACATGGCCGACTACGA
CTTCTGA

Upstream 100 bases:

>100_bases
TTTGAATGAATAAGATCATATTGACGAGATTCGATCAATATAGGCAACTGCAGGGGGCGCGAGGAGGATCGGCGCCGTCT
GTTCCGAGGGAGGAAATCGG

Downstream 100 bases:

>100_bases
TCGGGTTCGCCTGACCGGATCCGTCGCGAAGGGGCCCGCCGGGGCCCCTTCCTCCTCTCTCCTTTCCAGCACGGGCAGGC
CATGTCGGACACCCTCATCG

Product: ABC sugar transporter, periplasmic binding protein

Products: NA

Alternate protein names: AI-2-binding protein lsrB [H]

Number of amino acids: Translated: 348; Mature: 348

Protein sequence:

>348_residues
MKIMLTSAALALSVLAAPAVAQDIVDVSKVNKDLIATKDGKEYSIATVVKVDGIAWFDRMRDGITQFQKDTGHDVWMVGP
SQADAAAQVQLIENLIAQGVDAICVVPFSVEAVEPVLKKARDRGIVVITHEASNIQNTDFDLEAFDNLAYGANLMKELAK
SMGEKGKYVATVGSLTSKSQMEWIDGAVAYQKEHYPEMSLVGDRLETADDAAIDYTKLKEAMTTYPDITGILGAPMPTSA
GAGRLIAESGLKDKVFFAGTGLPSVAGEYLQNGDIQYIQFWDPAVAGYAMNMLAVAALEGKKDEIKPGLNLGLAGYEELT
APDAANPHLLYGAGWVGVTKDNMADYDF

Sequences:

>Translated_348_residues
MKIMLTSAALALSVLAAPAVAQDIVDVSKVNKDLIATKDGKEYSIATVVKVDGIAWFDRMRDGITQFQKDTGHDVWMVGP
SQADAAAQVQLIENLIAQGVDAICVVPFSVEAVEPVLKKARDRGIVVITHEASNIQNTDFDLEAFDNLAYGANLMKELAK
SMGEKGKYVATVGSLTSKSQMEWIDGAVAYQKEHYPEMSLVGDRLETADDAAIDYTKLKEAMTTYPDITGILGAPMPTSA
GAGRLIAESGLKDKVFFAGTGLPSVAGEYLQNGDIQYIQFWDPAVAGYAMNMLAVAALEGKKDEIKPGLNLGLAGYEELT
APDAANPHLLYGAGWVGVTKDNMADYDF
>Mature_348_residues
MKIMLTSAALALSVLAAPAVAQDIVDVSKVNKDLIATKDGKEYSIATVVKVDGIAWFDRMRDGITQFQKDTGHDVWMVGP
SQADAAAQVQLIENLIAQGVDAICVVPFSVEAVEPVLKKARDRGIVVITHEASNIQNTDFDLEAFDNLAYGANLMKELAK
SMGEKGKYVATVGSLTSKSQMEWIDGAVAYQKEHYPEMSLVGDRLETADDAAIDYTKLKEAMTTYPDITGILGAPMPTSA
GAGRLIAESGLKDKVFFAGTGLPSVAGEYLQNGDIQYIQFWDPAVAGYAMNMLAVAALEGKKDEIKPGLNLGLAGYEELT
APDAANPHLLYGAGWVGVTKDNMADYDF

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Binds AI-2 and delivers it to the lsrC and lsrD permeases [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1787795, Length=315, Percent_Identity=26.6666666666667, Blast_Score=85, Evalue=8e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37281; Mature: 37281

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIMLTSAALALSVLAAPAVAQDIVDVSKVNKDLIATKDGKEYSIATVVKVDGIAWFDRM
CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCHHHEECCCCCCEEEEEEEEECCHHHHHHH
RDGITQFQKDTGHDVWMVGPSQADAAAQVQLIENLIAQGVDAICVVPFSVEAVEPVLKKA
HHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHH
RDRGIVVITHEASNIQNTDFDLEAFDNLAYGANLMKELAKSMGEKGKYVATVGSLTSKSQ
CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHH
MEWIDGAVAYQKEHYPEMSLVGDRLETADDAAIDYTKLKEAMTTYPDITGILGAPMPTSA
HHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCCC
GAGRLIAESGLKDKVFFAGTGLPSVAGEYLQNGDIQYIQFWDPAVAGYAMNMLAVAALEG
CCCCHHHHCCCCCCEEEECCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCC
KKDEIKPGLNLGLAGYEELTAPDAANPHLLYGAGWVGVTKDNMADYDF
CHHHCCCCCCCCCCCCHHHCCCCCCCCCEEEECCEEEECCCCCCCCCC
>Mature Secondary Structure
MKIMLTSAALALSVLAAPAVAQDIVDVSKVNKDLIATKDGKEYSIATVVKVDGIAWFDRM
CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCHHHEECCCCCCEEEEEEEEECCHHHHHHH
RDGITQFQKDTGHDVWMVGPSQADAAAQVQLIENLIAQGVDAICVVPFSVEAVEPVLKKA
HHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHH
RDRGIVVITHEASNIQNTDFDLEAFDNLAYGANLMKELAKSMGEKGKYVATVGSLTSKSQ
CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHH
MEWIDGAVAYQKEHYPEMSLVGDRLETADDAAIDYTKLKEAMTTYPDITGILGAPMPTSA
HHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCCC
GAGRLIAESGLKDKVFFAGTGLPSVAGEYLQNGDIQYIQFWDPAVAGYAMNMLAVAALEG
CCCCHHHHCCCCCCEEEECCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCC
KKDEIKPGLNLGLAGYEELTAPDAANPHLLYGAGWVGVTKDNMADYDF
CHHHCCCCCCCCCCCCHHHCCCCCCCCCEEEECCEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA