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The map label for this gene is 77465478

Identifier: 77465478

GI number: 77465478

Start: 547466

End: 547996

Strand: Direct

Name: 77465478

Synonym: RSP_3477

Alternate gene names: NA

Gene position: 547466-547996 (Clockwise)

Preceding gene: 77465477

Following gene: 77465479

Centisome position: 58.05

GC content: 68.74

Gene sequence:

>531_bases
ATGAGCGAGAGCAAGGCGAAGGTGATCGAACGCAACCGCGCTCCGCGGGTGCAGATCGCCTATGACGTGGAGCATTACGG
CAGCCCGACGACCATCGAGCTGCCCTTCGTGATGGGGGTCATGGCCGACCTCGCCGGCAAGTCCGAGACGCGCGAGGCGC
AGAAACCCGCGGCCGAGCGGGCCTTCGTCGAGGTGGATGCCGGCCGGTTCGGCAAGTTCATGGAGGCGCTGAGCCCGCGG
GTGAAGGCACGGGTCCCGAACCGGCTGCCCGGCGGGGCGGAGGGCGGCGAGGAGGAGATGTTCGTCGATCTCAGCTTCCG
CAGCATGGGCGATTTCGCCCCCGACCGCATGGCCGAGCAGGTGCCGGCGCTGGCCGAGCTCCTGCGGATGCGGCGCCAGC
TCGAAGAGCTTCTCGGCTACATGGACGGCAAGGTCAGTGCCGAGAAGCGCATCGCCCAGCTTCTGACGAACGAGCCGCTG
CTCGCGCAGGTCGCGGGCGAGGCCGTGAAGTCGCGTCAGCCGGAGGAATGA

Upstream 100 bases:

>100_bases
CCAGCTCATGGAGGAGGTCGCCCCCTCGGGCATGAAGGAATTCCGCGCCGTGGCCGGCGTCGCGGACGAACGGACGAAAT
GACAGGGAGAGGCCGCGACC

Downstream 100 bases:

>100_bases
CCATGGCCGAAGCCAAGCAGGACACTGGCCCCGCCACCGCCGAGACGGAGGCGCTGGATCTGGGCGAGTTCAGTGCGCTT
CTGGAAAAGGACTTCCGCGT

Product: hypothetical protein

Products: NA

Alternate protein names: T6ss S; Cytoplasmic Protein SciH; Cytoplasmic Protein; Type VI Secretion System Protein; Protein ImpB; Type VI Secretion; Type VI Secretion Protein Family; Type VI Secretion System Core Protein; Conserved Protein

Number of amino acids: Translated: 176; Mature: 175

Protein sequence:

>176_residues
MSESKAKVIERNRAPRVQIAYDVEHYGSPTTIELPFVMGVMADLAGKSETREAQKPAAERAFVEVDAGRFGKFMEALSPR
VKARVPNRLPGGAEGGEEEMFVDLSFRSMGDFAPDRMAEQVPALAELLRMRRQLEELLGYMDGKVSAEKRIAQLLTNEPL
LAQVAGEAVKSRQPEE

Sequences:

>Translated_176_residues
MSESKAKVIERNRAPRVQIAYDVEHYGSPTTIELPFVMGVMADLAGKSETREAQKPAAERAFVEVDAGRFGKFMEALSPR
VKARVPNRLPGGAEGGEEEMFVDLSFRSMGDFAPDRMAEQVPALAELLRMRRQLEELLGYMDGKVSAEKRIAQLLTNEPL
LAQVAGEAVKSRQPEE
>Mature_175_residues
SESKAKVIERNRAPRVQIAYDVEHYGSPTTIELPFVMGVMADLAGKSETREAQKPAAERAFVEVDAGRFGKFMEALSPRV
KARVPNRLPGGAEGGEEEMFVDLSFRSMGDFAPDRMAEQVPALAELLRMRRQLEELLGYMDGKVSAEKRIAQLLTNEPLL
AQVAGEAVKSRQPEE

Specific function: Unknown

COG id: COG3516

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19494; Mature: 19362

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSESKAKVIERNRAPRVQIAYDVEHYGSPTTIELPFVMGVMADLAGKSETREAQKPAAER
CCCHHHHHHHCCCCCEEEEEEEHHHCCCCCEEEHHHHHHHHHHHCCCCHHHHHHCHHHHH
AFVEVDAGRFGKFMEALSPRVKARVPNRLPGGAEGGEEEMFVDLSFRSMGDFAPDRMAEQ
HHEEECCHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCEEEEEEHHHHCCCCHHHHHHH
VPALAELLRMRRQLEELLGYMDGKVSAEKRIAQLLTNEPLLAQVAGEAVKSRQPEE
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SESKAKVIERNRAPRVQIAYDVEHYGSPTTIELPFVMGVMADLAGKSETREAQKPAAER
CCHHHHHHHCCCCCEEEEEEEHHHCCCCCEEEHHHHHHHHHHHCCCCHHHHHHCHHHHH
AFVEVDAGRFGKFMEALSPRVKARVPNRLPGGAEGGEEEMFVDLSFRSMGDFAPDRMAEQ
HHEEECCHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCEEEEEEHHHHCCCCHHHHHHH
VPALAELLRMRRQLEELLGYMDGKVSAEKRIAQLLTNEPLLAQVAGEAVKSRQPEE
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA