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The map label for this gene is ydfH [C]

Identifier: 77465341

GI number: 77465341

Start: 403124

End: 403837

Strand: Direct

Name: ydfH [C]

Synonym: RSP_3339

Alternate gene names: 77465341

Gene position: 403124-403837 (Clockwise)

Preceding gene: 77465332

Following gene: 77465342

Centisome position: 42.75

GC content: 72.55

Gene sequence:

>714_bases
ATGGAGATGCGAGGCAGCATGACAGAGGACGCGGCGGCGCTTGCGGGCGGGGGCAACGACACGGTGGCGGGCCGTCTCGC
GCTTGCGATCCACGAGCACCGGATCCAGCCCGGCACGAAACTCGCGGAAGACGAGCTGGGCGAGATCTTCGGGGTGAGCC
GGACGCTGGTGCGCGCGGCGCTGCAGCAGCTTGCGCACGAGCGGCTGGTGACGCTGCGGCGCAACCGCGGCGCCTTCGTG
GCCCAGCCTTCGGTGCGCGAGGCGCGCGAGGTGTTCGAGGCCCGCGCCCTGCTCGAGCCGCGCACCGCCCGCTCGGCCGC
GGAACGGGCCACGGCCGCGGACATCGCCCGGCTGCAGCGTCATATCGACGAGGAACATGCCGCGCTCGATGCGGGCGATC
CGGGGCGCGCCCTGCGCCTCTCGGGCCAGTTCCACATCGAGGTCGCGGTCATCGCCGATCAGGACACGATCCGCGACTTC
GTGGCCCAGCTCGTCGCGCGATCCTCGCTCATCATCGCGCTCTACTGGCAGCGCCGCACCGCGCTCTGCGAAAGCCACGC
CCACCATGCGCTCCTGCGGGCGCTGGCCGACGGCGACGGGGCCCGCGCCGAGGAGATGATGAAGGGCCACCTCCTGGATC
TCGTCTCATCGCTCGACCTGCGCAATCCCGCGCCGCCCGCCCGGTCGCTGCGCGAGGCGCTCGACCGGATCTGA

Upstream 100 bases:

>100_bases
CCGCCGCTCGGGACCATGATCCGATGCAGGATTGTATACATATCTGTCCGAAGCAGCGGCTCCCCTTGCTCCTCCCGCGG
CCTGAGGCGAGGAATCGGCC

Downstream 100 bases:

>100_bases
TCGCCCCTGCGGCACATGTGCCCGCCCCGTGCCGCCCCTGCGGCACATGCGCCCGGCCCGTCACTCATTCCGTTTTTTGA
TTGCGATCAAGGACGTTTCC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; Transcriptional Regulator Protein GntR Family; Transcriptional Regulator Gntr Family; Transcriptional Regulator Protein; GntR Family Regulatory Protein; GntR Family Transcription Regulator Protein; GntR-Family Transcriptional Regulator; GntR Domain-Containing Protein; Bacterial Regulatory Protein; Transcription Regulator Protein; FCD Domain Protein; Transcriptional Regulator GntR Family Protein; GntR-Type Regulator; TRANSCRIPTIONal REGULATOR GntR Family

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MEMRGSMTEDAAALAGGGNDTVAGRLALAIHEHRIQPGTKLAEDELGEIFGVSRTLVRAALQQLAHERLVTLRRNRGAFV
AQPSVREAREVFEARALLEPRTARSAAERATAADIARLQRHIDEEHAALDAGDPGRALRLSGQFHIEVAVIADQDTIRDF
VAQLVARSSLIIALYWQRRTALCESHAHHALLRALADGDGARAEEMMKGHLLDLVSSLDLRNPAPPARSLREALDRI

Sequences:

>Translated_237_residues
MEMRGSMTEDAAALAGGGNDTVAGRLALAIHEHRIQPGTKLAEDELGEIFGVSRTLVRAALQQLAHERLVTLRRNRGAFV
AQPSVREAREVFEARALLEPRTARSAAERATAADIARLQRHIDEEHAALDAGDPGRALRLSGQFHIEVAVIADQDTIRDF
VAQLVARSSLIIALYWQRRTALCESHAHHALLRALADGDGARAEEMMKGHLLDLVSSLDLRNPAPPARSLREALDRI
>Mature_237_residues
MEMRGSMTEDAAALAGGGNDTVAGRLALAIHEHRIQPGTKLAEDELGEIFGVSRTLVRAALQQLAHERLVTLRRNRGAFV
AQPSVREAREVFEARALLEPRTARSAAERATAADIARLQRHIDEEHAALDAGDPGRALRLSGQFHIEVAVIADQDTIRDF
VAQLVARSSLIIALYWQRRTALCESHAHHALLRALADGDGARAEEMMKGHLLDLVSSLDLRNPAPPARSLREALDRI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25913; Mature: 25913

Theoretical pI: Translated: 6.87; Mature: 6.87

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEMRGSMTEDAAALAGGGNDTVAGRLALAIHEHRIQPGTKLAEDELGEIFGVSRTLVRAA
CCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
LQQLAHERLVTLRRNRGAFVAQPSVREAREVFEARALLEPRTARSAAERATAADIARLQR
HHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
HIDEEHAALDAGDPGRALRLSGQFHIEVAVIADQDTIRDFVAQLVARSSLIIALYWQRRT
HHHHHHHHCCCCCCCCEEEECCEEEEEEEEEECHHHHHHHHHHHHHHCCHHEEEHHHHHH
ALCESHAHHALLRALADGDGARAEEMMKGHLLDLVSSLDLRNPAPPARSLREALDRI
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MEMRGSMTEDAAALAGGGNDTVAGRLALAIHEHRIQPGTKLAEDELGEIFGVSRTLVRAA
CCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
LQQLAHERLVTLRRNRGAFVAQPSVREAREVFEARALLEPRTARSAAERATAADIARLQR
HHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
HIDEEHAALDAGDPGRALRLSGQFHIEVAVIADQDTIRDFVAQLVARSSLIIALYWQRRT
HHHHHHHHCCCCCCCCEEEECCEEEEEEEEEECHHHHHHHHHHHHHHCCHHEEEHHHHHH
ALCESHAHHALLRALADGDGARAEEMMKGHLLDLVSSLDLRNPAPPARSLREALDRI
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA