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The map label for this gene is yciR [C]

Identifier: 77465114

GI number: 77465114

Start: 143700

End: 146018

Strand: Reverse

Name: yciR [C]

Synonym: RSP_3101

Alternate gene names: 77465114

Gene position: 146018-143700 (Counterclockwise)

Preceding gene: 77465115

Following gene: 77465113

Centisome position: 15.48

GC content: 69.81

Gene sequence:

>2319_bases
ATGAACGCAGCACGTTCCCTGCAGGACGGTTCGGAGATCCGCCGGACGGGCCAGGCTGCCCGTTCCAGCCCCTCGACCGG
CAGGTCAGCGGCGCCCGTGGGCCGTCAGGAGGTGAGTATGGACAAGCCCCGTGCGCCTGCCTCGTTCTCGGCGCAGCTTG
TCGCGGCCATCCTGTTCGCCTGCCTCGTGGCCACGCTGTCGGTGCTCTTTCTGAGTTCCACGGCGGTGAACGCGGTCGAT
GCGGATGCCGAGGCCCGACAGATCCGCTTCGCCCAACGCGCCCTCCTGCGCGAGACCCGCGAGCTTCTCCAGCAGCAGCA
GGCTTCGACGGTCTGGGACGAGTCGGTGGTTCATGTCCGCGCCGGCGACCGCGACTGGATCGACTCCAACCTCGGCACCT
GGATGCATGAGGAATACGGGCAGGACGAGACCTACATCGTCGATCCGGCCTCGCGGATCGTCTATGTCGCGCGCGAGCGG
GTGACCGGGCAGCCCGGCCCCCGGGCGACCCTGCCGCCGGCCGTCGAGGAGATGGTCGAGGAGATGCGGCCGATGATGCG
CGCGGCGACCCGCAACCGGGCCGATTCCACGGCCGATGTGGCCGACCTGTCGCTCAGCCGCTTCGTGCTTCTGGGCGGCA
AGCCCGCGCTGGTGAGCGTGGTACCCATCGTGCCGGACACGCCCGCGGTGGTGCAGGCGGCAGGCACGGAATATCTGCAT
GTCGCGGTTCAGATGGCCGATGCCGACATGGCCGCGCGCCTCTCGAACACCTATGAGTTCGACCGCGGCTCTTTCTCGGT
TCAGCCCGGACCCGAAGACCGACTCTCCGTGCCGCTGCGCGACGGGGCGGGGCGGCCCATCGCCTGGTTCGTCTGGCGGG
CAGACCGCCCCGGGCACCGGATCGTCGATGAGATGCTGCCCGTGGTGGGCCTGTTCGCGGCCTTCGGCGCCGCCCTTCTG
ACCTGGCTCCTGCGCACGCTCTGGACCGCGTCGCGGCGGCTGCACCAGAGCGAGGAGGAAGCGCGCTATCTGGCGATGCA
CGATCCGCTGGCGGGCATCCCCAACCGCACGCTGTTCGAGGACCGGCTGGATCAGGCGCTCAAGGCCGAACGACGCGGGG
GTCCGCCGGTGGCCCTGCTCTGCCTCGACCTCGACCGGTTCAAGGCGGTCAACGACACGATGGGCCATCAGGCCGGCGAC
GAGCTCATCCGGCAGATGGCGGCGCGGCTGCGCTCGCATGTCCGCGAAACGGACACGGTGGCCCGGCTCGGCGGCGACGA
GTTCGGCGTGATCCTGATCGGGATGGCCAGCGACGAGACGCTCGGACGCTATTGCAGCGGCCTCGTGCATCTGCTGGCGG
CCCCCTGCGACCTCAAGTGCGGGCAGGTCCAGATCGGCGCGAGCATCGGCGCCGTGCGCGCGGCCAGCGTGGACGGCGGC
AGGGAGGCCATCCTGCGCAGCGCCGACACGGCTCTCTACCGCGCCAAGGCCGAGGGGCGCGGACGCTACTGCATCGCCAC
GCCCGAGATGAACGACATCTTCCGCCGCCGCCACGAGATCGAGCGCGACCTGCGCGAGGCCGTCGCCGAGGGCGGGCAGA
TCCATGTGCTCTACCAGCCCATCTTCGATGCCGAGGAACGGATCGTGGCGGCGGAGGCGCTGGTGCGCTGGAACCACCCG
ATCCTCGGGCAGATGGGCCCGGAGACCTTCCTCTCCATCGCCGAGGAGACCGGCCTGATCGATCGGATCGGCCACCATGT
CCTCGAACAGGCCTGCATCCTTGCCGCCACCTCGGGCATTCCGCGGGTCTCGGTCAATATCTCGCCGGTGCAGCTGCGCC
AGGAGACCTTCGCCGACGAGGTTCTGGCGGTGATGGCGGCGCATTCCCTTTCGGGCGAACGGCTCGTGCTGGAACTGACC
GAGAAATTCACGCTCGACGCGGGCCCTGCGACGCTGGCCAATCTGGCACGTCTGCGCGCAGCGGGCGTGTCGATTGCGCT
CGACGATTTCGCGACCGGCCAGTCGCTCCTGCGCTATGTGCGCGACTACCAGATCGACACGATCAAGATCGACCGCTCCT
ATGTGGCGCGGCTCGGCACCGGCGACGGCACCGACCAGATCGTGCGCGCGATCCTCGACCTCGGCCGCGCCATGGGCATC
GAGGTCACGGCCGAGGGGGTCGAGCGCGCGTCCCAGCGCGAGGCGCTTCTCGGCATGGGCTGCCACGGCTTTCAGGGCTA
TCTGCTCGGCCGGCCGATGGATCCGCTGCGGCTCGCGGCGCTGAGCGCGCGCAAGGGCGTCGCGCAGAAGAGCGCCTGA

Upstream 100 bases:

>100_bases
ACTGATCTGAAAGACGGCCGGCACCCGCCGGCCGATCCACCTTCCATCATCTTTCGTATGTAGTTTCACGGATTTCTTGA
GCGCTCCGGCGGAATCGACG

Downstream 100 bases:

>100_bases
CCGAAGCGCCGGAACCGCGGCCGTCCCCCGCCGTTCCCTTTCCGCGCGCGCTCGCCACGGGGAGAAGGACCAGGGATGAC
GGCAGGGACGGCAGTCCGGA

Product: periplasmic sensor diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 772; Mature: 772

Protein sequence:

>772_residues
MNAARSLQDGSEIRRTGQAARSSPSTGRSAAPVGRQEVSMDKPRAPASFSAQLVAAILFACLVATLSVLFLSSTAVNAVD
ADAEARQIRFAQRALLRETRELLQQQQASTVWDESVVHVRAGDRDWIDSNLGTWMHEEYGQDETYIVDPASRIVYVARER
VTGQPGPRATLPPAVEEMVEEMRPMMRAATRNRADSTADVADLSLSRFVLLGGKPALVSVVPIVPDTPAVVQAAGTEYLH
VAVQMADADMAARLSNTYEFDRGSFSVQPGPEDRLSVPLRDGAGRPIAWFVWRADRPGHRIVDEMLPVVGLFAAFGAALL
TWLLRTLWTASRRLHQSEEEARYLAMHDPLAGIPNRTLFEDRLDQALKAERRGGPPVALLCLDLDRFKAVNDTMGHQAGD
ELIRQMAARLRSHVRETDTVARLGGDEFGVILIGMASDETLGRYCSGLVHLLAAPCDLKCGQVQIGASIGAVRAASVDGG
REAILRSADTALYRAKAEGRGRYCIATPEMNDIFRRRHEIERDLREAVAEGGQIHVLYQPIFDAEERIVAAEALVRWNHP
ILGQMGPETFLSIAEETGLIDRIGHHVLEQACILAATSGIPRVSVNISPVQLRQETFADEVLAVMAAHSLSGERLVLELT
EKFTLDAGPATLANLARLRAAGVSIALDDFATGQSLLRYVRDYQIDTIKIDRSYVARLGTGDGTDQIVRAILDLGRAMGI
EVTAEGVERASQREALLGMGCHGFQGYLLGRPMDPLRLAALSARKGVAQKSA

Sequences:

>Translated_772_residues
MNAARSLQDGSEIRRTGQAARSSPSTGRSAAPVGRQEVSMDKPRAPASFSAQLVAAILFACLVATLSVLFLSSTAVNAVD
ADAEARQIRFAQRALLRETRELLQQQQASTVWDESVVHVRAGDRDWIDSNLGTWMHEEYGQDETYIVDPASRIVYVARER
VTGQPGPRATLPPAVEEMVEEMRPMMRAATRNRADSTADVADLSLSRFVLLGGKPALVSVVPIVPDTPAVVQAAGTEYLH
VAVQMADADMAARLSNTYEFDRGSFSVQPGPEDRLSVPLRDGAGRPIAWFVWRADRPGHRIVDEMLPVVGLFAAFGAALL
TWLLRTLWTASRRLHQSEEEARYLAMHDPLAGIPNRTLFEDRLDQALKAERRGGPPVALLCLDLDRFKAVNDTMGHQAGD
ELIRQMAARLRSHVRETDTVARLGGDEFGVILIGMASDETLGRYCSGLVHLLAAPCDLKCGQVQIGASIGAVRAASVDGG
REAILRSADTALYRAKAEGRGRYCIATPEMNDIFRRRHEIERDLREAVAEGGQIHVLYQPIFDAEERIVAAEALVRWNHP
ILGQMGPETFLSIAEETGLIDRIGHHVLEQACILAATSGIPRVSVNISPVQLRQETFADEVLAVMAAHSLSGERLVLELT
EKFTLDAGPATLANLARLRAAGVSIALDDFATGQSLLRYVRDYQIDTIKIDRSYVARLGTGDGTDQIVRAILDLGRAMGI
EVTAEGVERASQREALLGMGCHGFQGYLLGRPMDPLRLAALSARKGVAQKSA
>Mature_772_residues
MNAARSLQDGSEIRRTGQAARSSPSTGRSAAPVGRQEVSMDKPRAPASFSAQLVAAILFACLVATLSVLFLSSTAVNAVD
ADAEARQIRFAQRALLRETRELLQQQQASTVWDESVVHVRAGDRDWIDSNLGTWMHEEYGQDETYIVDPASRIVYVARER
VTGQPGPRATLPPAVEEMVEEMRPMMRAATRNRADSTADVADLSLSRFVLLGGKPALVSVVPIVPDTPAVVQAAGTEYLH
VAVQMADADMAARLSNTYEFDRGSFSVQPGPEDRLSVPLRDGAGRPIAWFVWRADRPGHRIVDEMLPVVGLFAAFGAALL
TWLLRTLWTASRRLHQSEEEARYLAMHDPLAGIPNRTLFEDRLDQALKAERRGGPPVALLCLDLDRFKAVNDTMGHQAGD
ELIRQMAARLRSHVRETDTVARLGGDEFGVILIGMASDETLGRYCSGLVHLLAAPCDLKCGQVQIGASIGAVRAASVDGG
REAILRSADTALYRAKAEGRGRYCIATPEMNDIFRRRHEIERDLREAVAEGGQIHVLYQPIFDAEERIVAAEALVRWNHP
ILGQMGPETFLSIAEETGLIDRIGHHVLEQACILAATSGIPRVSVNISPVQLRQETFADEVLAVMAAHSLSGERLVLELT
EKFTLDAGPATLANLARLRAAGVSIALDDFATGQSLLRYVRDYQIDTIKIDRSYVARLGTGDGTDQIVRAILDLGRAMGI
EVTAEGVERASQREALLGMGCHGFQGYLLGRPMDPLRLAALSARKGVAQKSA

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=422, Percent_Identity=33.8862559241706, Blast_Score=217, Evalue=2e-57,
Organism=Escherichia coli, GI87081921, Length=425, Percent_Identity=28.2352941176471, Blast_Score=187, Evalue=2e-48,
Organism=Escherichia coli, GI226510982, Length=442, Percent_Identity=27.3755656108597, Blast_Score=136, Evalue=5e-33,
Organism=Escherichia coli, GI1787055, Length=245, Percent_Identity=35.5102040816327, Blast_Score=134, Evalue=3e-32,
Organism=Escherichia coli, GI1788502, Length=227, Percent_Identity=33.4801762114537, Blast_Score=133, Evalue=5e-32,
Organism=Escherichia coli, GI87081845, Length=268, Percent_Identity=32.4626865671642, Blast_Score=131, Evalue=1e-31,
Organism=Escherichia coli, GI1786507, Length=221, Percent_Identity=32.579185520362, Blast_Score=126, Evalue=6e-30,
Organism=Escherichia coli, GI87082096, Length=452, Percent_Identity=27.6548672566372, Blast_Score=119, Evalue=1e-27,
Organism=Escherichia coli, GI87081980, Length=248, Percent_Identity=31.4516129032258, Blast_Score=115, Evalue=1e-26,
Organism=Escherichia coli, GI1788381, Length=442, Percent_Identity=27.1493212669683, Blast_Score=113, Evalue=6e-26,
Organism=Escherichia coli, GI1790496, Length=240, Percent_Identity=30.8333333333333, Blast_Score=112, Evalue=8e-26,
Organism=Escherichia coli, GI87081743, Length=256, Percent_Identity=32.421875, Blast_Score=108, Evalue=1e-24,
Organism=Escherichia coli, GI1788849, Length=246, Percent_Identity=30.4878048780488, Blast_Score=103, Evalue=4e-23,
Organism=Escherichia coli, GI145693134, Length=170, Percent_Identity=33.5294117647059, Blast_Score=93, Evalue=7e-20,
Organism=Escherichia coli, GI1786584, Length=217, Percent_Identity=29.9539170506912, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI1788956, Length=158, Percent_Identity=35.4430379746835, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI1787816, Length=171, Percent_Identity=35.0877192982456, Blast_Score=87, Evalue=5e-18,
Organism=Escherichia coli, GI1787262, Length=162, Percent_Identity=33.9506172839506, Blast_Score=85, Evalue=2e-17,
Organism=Escherichia coli, GI87081974, Length=144, Percent_Identity=30.5555555555556, Blast_Score=81, Evalue=3e-16,
Organism=Escherichia coli, GI87082007, Length=195, Percent_Identity=31.7948717948718, Blast_Score=80, Evalue=7e-16,
Organism=Escherichia coli, GI87081881, Length=202, Percent_Identity=31.1881188118812, Blast_Score=77, Evalue=5e-15,
Organism=Escherichia coli, GI87081977, Length=173, Percent_Identity=28.3236994219653, Blast_Score=74, Evalue=4e-14,
Organism=Escherichia coli, GI1787056, Length=143, Percent_Identity=33.5664335664336, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1787410, Length=225, Percent_Identity=26.6666666666667, Blast_Score=67, Evalue=5e-12,
Organism=Escherichia coli, GI1788085, Length=175, Percent_Identity=26.2857142857143, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 84059; Mature: 84059

Theoretical pI: Translated: 6.02; Mature: 6.02

Prosite motif: PS00435 PEROXIDASE_1 ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAARSLQDGSEIRRTGQAARSSPSTGRSAAPVGRQEVSMDKPRAPASFSAQLVAAILFA
CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHH
CLVATLSVLFLSSTAVNAVDADAEARQIRFAQRALLRETRELLQQQQASTVWDESVVHVR
HHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
AGDRDWIDSNLGTWMHEEYGQDETYIVDPASRIVYVARERVTGQPGPRATLPPAVEEMVE
CCCCCHHHCCCCHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
EMRPMMRAATRNRADSTADVADLSLSRFVLLGGKPALVSVVPIVPDTPAVVQAAGTEYLH
HHHHHHHHHHHCCCCCCHHHHHHHHHHEEEECCCCCEEEEEECCCCCCHHHHHCCCCEEE
VAVQMADADMAARLSNTYEFDRGSFSVQPGPEDRLSVPLRDGAGRPIAWFVWRADRPGHR
EEEEECCHHHHHHHHCCCEECCCCEECCCCCCCCCEECCCCCCCCCEEEEEEECCCCCHH
IVDEMLPVVGLFAAFGAALLTWLLRTLWTASRRLHQSEEEARYLAMHDPLAGIPNRTLFE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEEEECCCCCCCCCCHHHH
DRLDQALKAERRGGPPVALLCLDLDRFKAVNDTMGHQAGDELIRQMAARLRSHVRETDTV
HHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
ARLGGDEFGVILIGMASDETLGRYCSGLVHLLAAPCDLKCGQVQIGASIGAVRAASVDGG
HHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCEEEECCCCH
REAILRSADTALYRAKAEGRGRYCIATPEMNDIFRRRHEIERDLREAVAEGGQIHVLYQP
HHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECC
IFDAEERIVAAEALVRWNHPILGQMGPETFLSIAEETGLIDRIGHHVLEQACILAATSGI
CCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC
PRVSVNISPVQLRQETFADEVLAVMAAHSLSGERLVLELTEKFTLDAGPATLANLARLRA
CEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHCCCCCHHHHHHHHHHHH
AGVSIALDDFATGQSLLRYVRDYQIDTIKIDRSYVARLGTGDGTDQIVRAILDLGRAMGI
CCCEEEEHHHCCHHHHHHHHHHCCCEEEEECHHHHHHCCCCCCHHHHHHHHHHHHHHCCC
EVTAEGVERASQREALLGMGCHGFQGYLLGRPMDPLRLAALSARKGVAQKSA
EEEHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNAARSLQDGSEIRRTGQAARSSPSTGRSAAPVGRQEVSMDKPRAPASFSAQLVAAILFA
CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHH
CLVATLSVLFLSSTAVNAVDADAEARQIRFAQRALLRETRELLQQQQASTVWDESVVHVR
HHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
AGDRDWIDSNLGTWMHEEYGQDETYIVDPASRIVYVARERVTGQPGPRATLPPAVEEMVE
CCCCCHHHCCCCHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
EMRPMMRAATRNRADSTADVADLSLSRFVLLGGKPALVSVVPIVPDTPAVVQAAGTEYLH
HHHHHHHHHHHCCCCCCHHHHHHHHHHEEEECCCCCEEEEEECCCCCCHHHHHCCCCEEE
VAVQMADADMAARLSNTYEFDRGSFSVQPGPEDRLSVPLRDGAGRPIAWFVWRADRPGHR
EEEEECCHHHHHHHHCCCEECCCCEECCCCCCCCCEECCCCCCCCCEEEEEEECCCCCHH
IVDEMLPVVGLFAAFGAALLTWLLRTLWTASRRLHQSEEEARYLAMHDPLAGIPNRTLFE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEEEECCCCCCCCCCHHHH
DRLDQALKAERRGGPPVALLCLDLDRFKAVNDTMGHQAGDELIRQMAARLRSHVRETDTV
HHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
ARLGGDEFGVILIGMASDETLGRYCSGLVHLLAAPCDLKCGQVQIGASIGAVRAASVDGG
HHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCEEEECCCCH
REAILRSADTALYRAKAEGRGRYCIATPEMNDIFRRRHEIERDLREAVAEGGQIHVLYQP
HHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECC
IFDAEERIVAAEALVRWNHPILGQMGPETFLSIAEETGLIDRIGHHVLEQACILAATSGI
CCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC
PRVSVNISPVQLRQETFADEVLAVMAAHSLSGERLVLELTEKFTLDAGPATLANLARLRA
CEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHCCCCCHHHHHHHHHHHH
AGVSIALDDFATGQSLLRYVRDYQIDTIKIDRSYVARLGTGDGTDQIVRAILDLGRAMGI
CCCEEEEHHHCCHHHHHHHHHHCCCEEEEECHHHHHHCCCCCCHHHHHHHHHHHHHHCCC
EVTAEGVERASQREALLGMGCHGFQGYLLGRPMDPLRLAALSARKGVAQKSA
EEEHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]