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The map label for this gene is qoxB [H]

Identifier: 77465112

GI number: 77465112

Start: 141893

End: 142678

Strand: Reverse

Name: qoxB [H]

Synonym: RSP_3098

Alternate gene names: 77465112

Gene position: 142678-141893 (Counterclockwise)

Preceding gene: 77465113

Following gene: 77465111

Centisome position: 15.13

GC content: 69.97

Gene sequence:

>786_bases
ATGGGCCGGGTGGCCCCAGATCGCGATACGGCTCTCCGTCTGTTCGAAATCGGGGCTCGAGCTGATCGGATCGATCAGCG
TATTGTCCTCGGTCTGCACCTGCTTGTCCGTCATCGGCTCCTCCGCGGCTGGCTGTTCCTCCTCACAACGCCGATCCTGC
TCTCCGGTTGCGCCGAGGATCTGTCGGCCGTTCATCCCGCCGGGCCCGCGGCCGAAGTCATCGCGCGGCTGTGGTGGGTG
ATGCTCGCGGGCGCCACGGCCATCTTCCTCTTCGTGACGGGGCTTCTGGCCCTCGCCATGCGCCGCAGGCCGGGCGGCGG
CAGCGACCGGCTCTGGCTGCAGGGGCTGGGGCTGGCTTTCCCGCTCACCGTGCTCGCGGCCCTTCTGGCTTACGGGCTGA
CGGTGGGCGAGGCGCTTCTGCCCCACGACCATCCCGAGCGGGTGACGGTGCGGGCCGAGGCACGGCAATGGGCCTGGCGC
TTCGGCTACGAGGACCGCCCGGGCCTTCAGACCGAGGACATCCTCCATATCCCGGCCGGCCGGCCGGTGGACGTGCAGAT
CACCAGCGCCGACGTGATCCACAGTTTCTGGGTGCCGCGGCTGGCCGGCAAGATGGACGCCATCCCGGGCCATGTGAACC
TGCTGCGGATCGAGGCGCGCGTGCCCGGCGACTATGCCGGCGTCAGCGCCGAATTCAGCGGACCCGGCTACCGCACCCAC
GCCTTCACGGTCCGCGCGCACGATGCCGCCGACTGGCAGGCCTTCCTCGAGGCTCCCTCTCCATGA

Upstream 100 bases:

>100_bases
GCGCCGCCCGCGCCCAGAAGATGTCGCCGGACAGCCAGTAGAGCACGTCCGCGCCGAAGGTGCAGAAGGTCAGCGCCACC
GGGAAGGCCACGGTCATGGC

Downstream 100 bases:

>100_bases
ATGCCCTGCGCCGACACCGCCTCCTCACGCGGATCTGGGCCTCCGAGCCCGGCTGGCGCGGCTGGTTCACCACCGTGAAC
CACACCGATCTTGGCCGGAT

Product: QoxB, quinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome aa3 subunit 2; Cytochrome c oxidase polypeptide II; Oxidase aa(3) subunit 2 [H]

Number of amino acids: Translated: 261; Mature: 260

Protein sequence:

>261_residues
MGRVAPDRDTALRLFEIGARADRIDQRIVLGLHLLVRHRLLRGWLFLLTTPILLSGCAEDLSAVHPAGPAAEVIARLWWV
MLAGATAIFLFVTGLLALAMRRRPGGGSDRLWLQGLGLAFPLTVLAALLAYGLTVGEALLPHDHPERVTVRAEARQWAWR
FGYEDRPGLQTEDILHIPAGRPVDVQITSADVIHSFWVPRLAGKMDAIPGHVNLLRIEARVPGDYAGVSAEFSGPGYRTH
AFTVRAHDAADWQAFLEAPSP

Sequences:

>Translated_261_residues
MGRVAPDRDTALRLFEIGARADRIDQRIVLGLHLLVRHRLLRGWLFLLTTPILLSGCAEDLSAVHPAGPAAEVIARLWWV
MLAGATAIFLFVTGLLALAMRRRPGGGSDRLWLQGLGLAFPLTVLAALLAYGLTVGEALLPHDHPERVTVRAEARQWAWR
FGYEDRPGLQTEDILHIPAGRPVDVQITSADVIHSFWVPRLAGKMDAIPGHVNLLRIEARVPGDYAGVSAEFSGPGYRTH
AFTVRAHDAADWQAFLEAPSP
>Mature_260_residues
GRVAPDRDTALRLFEIGARADRIDQRIVLGLHLLVRHRLLRGWLFLLTTPILLSGCAEDLSAVHPAGPAAEVIARLWWVM
LAGATAIFLFVTGLLALAMRRRPGGGSDRLWLQGLGLAFPLTVLAALLAYGLTVGEALLPHDHPERVTVRAEARQWAWRF
GYEDRPGLQTEDILHIPAGRPVDVQITSADVIHSFWVPRLAGKMDAIPGHVNLLRIEARVPGDYAGVSAEFSGPGYRTHA
FTVRAHDAADWQAFLEAPSP

Specific function: Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) [H]

COG id: COG1622

COG function: function code C; Heme/copper-type cytochrome/quinol oxidases, subunit 2

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cytochrome c domain [H]

Homologues:

Organism=Escherichia coli, GI1786635, Length=228, Percent_Identity=27.6315789473684, Blast_Score=78, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001505
- InterPro:   IPR008972
- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR014222
- InterPro:   IPR015964
- InterPro:   IPR002429
- InterPro:   IPR011759 [H]

Pfam domain/function: PF00116 COX2; PF02790 COX2_TM; PF00034 Cytochrom_C [H]

EC number: =1.9.3.1 [H]

Molecular weight: Translated: 28611; Mature: 28480

Theoretical pI: Translated: 7.89; Mature: 7.89

Prosite motif: PS50857 COX2_CUA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRVAPDRDTALRLFEIGARADRIDQRIVLGLHLLVRHRLLRGWLFLLTTPILLSGCAED
CCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSAVHPAGPAAEVIARLWWVMLAGATAIFLFVTGLLALAMRRRPGGGSDRLWLQGLGLAF
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHEECCCHHH
PLTVLAALLAYGLTVGEALLPHDHPERVTVRAEARQWAWRFGYEDRPGLQTEDILHIPAG
HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHCCCCCCCCCCCCCEEECCCC
RPVDVQITSADVIHSFWVPRLAGKMDAIPGHVNLLRIEARVPGDYAGVSAEFSGPGYRTH
CCEEEEECHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCEEECCCCCEEEE
AFTVRAHDAADWQAFLEAPSP
EEEEEECCCHHHHHHHCCCCC
>Mature Secondary Structure 
GRVAPDRDTALRLFEIGARADRIDQRIVLGLHLLVRHRLLRGWLFLLTTPILLSGCAED
CCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSAVHPAGPAAEVIARLWWVMLAGATAIFLFVTGLLALAMRRRPGGGSDRLWLQGLGLAF
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHEECCCHHH
PLTVLAALLAYGLTVGEALLPHDHPERVTVRAEARQWAWRFGYEDRPGLQTEDILHIPAG
HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHCCCCCCCCCCCCCEEECCCC
RPVDVQITSADVIHSFWVPRLAGKMDAIPGHVNLLRIEARVPGDYAGVSAEFSGPGYRTH
CCEEEEECHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCEEECCCCCEEEE
AFTVRAHDAADWQAFLEAPSP
EEEEEECCCHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7678007 [H]