Click here to switch to the map view.

The map label for this gene is yeaM [H]

Identifier: 77461934

GI number: 77461934

Start: 6405917

End: 6406774

Strand: Direct

Name: yeaM [H]

Synonym: Pfl01_5716

Alternate gene names: 77461934

Gene position: 6405917-6406774 (Clockwise)

Preceding gene: 77461927

Following gene: 77461935

Centisome position: 99.5

GC content: 60.49

Gene sequence:

>858_bases
ATGACAGTTTATATCGACAAAGTGACATTCCATGGAAATGCGATGAAGCAAGATGCCCGCACCTTCGGTAAGCCTGACGG
TTTGAACGGTCGTAGCGAGGACTACCTGGATTACCAGGACGTGCCGCGCGTGGTGACGGCGCTGGTGCGTGACCAAGCCG
CCGGTGCCTACAACCCGCCGCATACCCACCGCCATGGACAGTTGCTGTACGCAGTGAGCGGGGTCATGCGCGCTGTGGCC
CAGGGGAGCCTGTGGTTCCTGCCGCCCAAGCGGGCCTTATGGATCCCCGCCGAGGAAGAACACGACCAGTTGATGCTCAC
GCCGGTACAGATGCGCTCGATTTACATCCAGGCCGACGCGGCCGCCTGTTTTGGTGACCGTTGCCGGATTGTGGATGTTT
CGCTGCTACTGCGCGAACTGATCCTGGTGCTGGCTGATGAGCCCATCGAATATGCCCTCGAAGGACGCAATACCCATGTG
GTGGCGTTGATCCTCAGTGAATTGGCGGCAGCCCGTACGTTGCCGTTGCAAATCCCGTGGCCGGTGGATCGTCGGCTGCA
GGTGGTGTGCAACGCGATTCTTGACGCGCCTGGACAAAGTCATCGGATCGAATACTGGGCCGACAAGGTCGGGGCCAGCT
CGCGGACCTTGATCCGTCTGTTTCTCAAGGAAACCGGCCTAACCTACCGCCAGTGGGTCCAGCAAGTGCGCTTGGCCTGC
GCCTTAGAGCGTCTGGAAAATGGCGAGCCCATCGGGCGGATCGCCCAGGAACTGGGTTATGTCGGTGCCAGCGCCTTCAG
TGCAATGTTTCGCCGGGCTACCGGTACTTCACCCCGCGAGTTTCTGGTCCGTGGCTGA

Upstream 100 bases:

>100_bases
GATGACGGCGGCCACGCTGTGTTTGTCAGTGGAAGTCATGTTTGTGTGAACTTCGAAAGGATGAGTCGAGCGGATCGTAT
CAATGTGAAACAATCGGCAA

Downstream 100 bases:

>100_bases
GTGCTAGGGGGCCTCACAGCGAGGAAGCGTCAACTGCCGCACCCGCCGCCTTCACTGTTGTACAAGGTCAGGGGGCCTAC
ACGGAGAAAACCAAGTGCTG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 284

Protein sequence:

>285_residues
MTVYIDKVTFHGNAMKQDARTFGKPDGLNGRSEDYLDYQDVPRVVTALVRDQAAGAYNPPHTHRHGQLLYAVSGVMRAVA
QGSLWFLPPKRALWIPAEEEHDQLMLTPVQMRSIYIQADAAACFGDRCRIVDVSLLLRELILVLADEPIEYALEGRNTHV
VALILSELAAARTLPLQIPWPVDRRLQVVCNAILDAPGQSHRIEYWADKVGASSRTLIRLFLKETGLTYRQWVQQVRLAC
ALERLENGEPIGRIAQELGYVGASAFSAMFRRATGTSPREFLVRG

Sequences:

>Translated_285_residues
MTVYIDKVTFHGNAMKQDARTFGKPDGLNGRSEDYLDYQDVPRVVTALVRDQAAGAYNPPHTHRHGQLLYAVSGVMRAVA
QGSLWFLPPKRALWIPAEEEHDQLMLTPVQMRSIYIQADAAACFGDRCRIVDVSLLLRELILVLADEPIEYALEGRNTHV
VALILSELAAARTLPLQIPWPVDRRLQVVCNAILDAPGQSHRIEYWADKVGASSRTLIRLFLKETGLTYRQWVQQVRLAC
ALERLENGEPIGRIAQELGYVGASAFSAMFRRATGTSPREFLVRG
>Mature_284_residues
TVYIDKVTFHGNAMKQDARTFGKPDGLNGRSEDYLDYQDVPRVVTALVRDQAAGAYNPPHTHRHGQLLYAVSGVMRAVAQ
GSLWFLPPKRALWIPAEEEHDQLMLTPVQMRSIYIQADAAACFGDRCRIVDVSLLLRELILVLADEPIEYALEGRNTHVV
ALILSELAAARTLPLQIPWPVDRRLQVVCNAILDAPGQSHRIEYWADKVGASSRTLIRLFLKETGLTYRQWVQQVRLACA
LERLENGEPIGRIAQELGYVGASAFSAMFRRATGTSPREFLVRG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=227, Percent_Identity=30.8370044052863, Blast_Score=127, Evalue=8e-31,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 31920; Mature: 31789

Theoretical pI: Translated: 7.99; Mature: 7.99

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVYIDKVTFHGNAMKQDARTFGKPDGLNGRSEDYLDYQDVPRVVTALVRDQAAGAYNPP
CEEEEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
HTHRHGQLLYAVSGVMRAVAQGSLWFLPPKRALWIPAEEEHDQLMLTPVQMRSIYIQADA
CCCCCCHHHHHHHHHHHHHHCCCEEEECCCCEEECCCCCCCCCEEEEEEEEEEEEEEECC
AACFGDRCRIVDVSLLLRELILVLADEPIEYALEGRNTHVVALILSELAAARTLPLQIPW
HHHHCCCCEEEEHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCEECCC
PVDRRLQVVCNAILDAPGQSHRIEYWADKVGASSRTLIRLFLKETGLTYRQWVQQVRLAC
CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
ALERLENGEPIGRIAQELGYVGASAFSAMFRRATGTSPREFLVRG
HHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHCCCC
>Mature Secondary Structure 
TVYIDKVTFHGNAMKQDARTFGKPDGLNGRSEDYLDYQDVPRVVTALVRDQAAGAYNPP
EEEEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
HTHRHGQLLYAVSGVMRAVAQGSLWFLPPKRALWIPAEEEHDQLMLTPVQMRSIYIQADA
CCCCCCHHHHHHHHHHHHHHCCCEEEECCCCEEECCCCCCCCCEEEEEEEEEEEEEEECC
AACFGDRCRIVDVSLLLRELILVLADEPIEYALEGRNTHVVALILSELAAARTLPLQIPW
HHHHCCCCEEEEHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCEECCC
PVDRRLQVVCNAILDAPGQSHRIEYWADKVGASSRTLIRLFLKETGLTYRQWVQQVRLAC
CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
ALERLENGEPIGRIAQELGYVGASAFSAMFRRATGTSPREFLVRG
HHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]