| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is dipZ [H]
Identifier: 77461927
GI number: 77461927
Start: 6396156
End: 6397367
Strand: Direct
Name: dipZ [H]
Synonym: Pfl01_5707
Alternate gene names: 77461927
Gene position: 6396156-6397367 (Clockwise)
Preceding gene: 77461926
Following gene: 77461934
Centisome position: 99.34
GC content: 61.39
Gene sequence:
>1212_bases ATGTTTCTCATCGCTTTCCTGGGCGGTCTGTTGACTGTCCTCAGTCCGTGCATTCTGCCGGTAGTGCCGTTCCTGTTCGC CGGTGCCGACCGTACCCGTTCCTCCATTTTGCTGACCCTTGGCGGTATGGCCCTGACCTTCGCCCTGATCTCCAGTCTGG CGGTGGTCAGTAGCGAGTGGGTGATCCAGGCCAGCAACACCGGTCGTCACATTGCGCTGGCGGTGATGGTGCTGTTTGCG CTGTCGCTGATTTCCGCCCGTATCGGTGACTGGCTGGCCCGGCCCTTCGTGCTGCTGGGCAATCGCCTCGACCCGGACAG CCGGAAAAAGACCGGCCCGATGGCGTCGATCATGATCGGTGTCGCCACCGGTCTGCTGTGGGCGCCGTGCGCCGGCCCGA TTCTCGGCGTGATCCTCACCGGTGCCATGCTGCAAGGCGCCAACGCCCAGACCAGCCTGTTGCTGCTGGCTTACGGTGCG GGCAGTGCGCTGTCGCTGGGGACGTTGATCTTCGCCGGTCGCGGCCTGGTCAACCGACTGAAACCGTCGATTCCTTTCAC TGGCTGGTTCCGCCGCGGCGCGGGTGTTGCGGTGCTGGCGACGGCGGCGGTGATCGCCACCGGTGCTGACAACGTGCTGC TGGCCAACACCTCGTCACAAGGCGTGGCATCGGTCGAGAAAAGCGTGCTGGAGAACGTGCCGAAAGTGGTGGACTACTTC GTCAGCAAAGTGCGTGCGGACTCGATCGAAGACGAGGCCGGCAAAGGCACGATGCCGTCGCTGTCTGGCGCGGTGCAGTG GCTGAACTCACCGGAACTGACGGCTGAGTCCCTGCGCGGCAAAGTGGTGCTGGTGGACTTCTGGACCTACGACTGCATCA ACTGTCAGCACACCCTGCCGTACGTGAAGGAGTGGGAGAAGAAGTACGGTAAGGACGGTCTGGTGGTGATCGGCGTGCAC ACCCCGGAGTACGGTTACGAGCGGATCATCGACAACGTCAAGGATCAAGTGAAGAAGCTCGGCATCACCTACCCGGTGGC CATCGACAACAACTACACAATCTGGCGCAACTTCGATAACCAGTACTGGCCGGCGCATTACTTGGTCGACGCCAAGGGCC AGATACGTTACACCCACTTTGGCGAAGGTAGTTATAAGGTGCAGGAGCAGATGATCCAGACTCTGTTGAACGAGGCGAAA GCTTCGCAGTGA
Upstream 100 bases:
>100_bases TGGCTGGAAAGCCAGACGGCTTGAGGATTGAAGGGTGCTGCCCGTAACGGGCGACCCCCGATCCAGTCAACAGGCACCCC TCATTCAAAAGGTGAACCTC
Downstream 100 bases:
>100_bases CTCAATGCAGCGGCATTGCTAGTAACGCCGCCATCTTGACTAGGCCCGCCAAAGAGCGGGCCTTCATTTTGCGCATCACT TTTCCGCGATGGGCTTTGAC
Product: cytochrome c biogenesis protein, transmembrane region
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 403; Mature: 403
Protein sequence:
>403_residues MFLIAFLGGLLTVLSPCILPVVPFLFAGADRTRSSILLTLGGMALTFALISSLAVVSSEWVIQASNTGRHIALAVMVLFA LSLISARIGDWLARPFVLLGNRLDPDSRKKTGPMASIMIGVATGLLWAPCAGPILGVILTGAMLQGANAQTSLLLLAYGA GSALSLGTLIFAGRGLVNRLKPSIPFTGWFRRGAGVAVLATAAVIATGADNVLLANTSSQGVASVEKSVLENVPKVVDYF VSKVRADSIEDEAGKGTMPSLSGAVQWLNSPELTAESLRGKVVLVDFWTYDCINCQHTLPYVKEWEKKYGKDGLVVIGVH TPEYGYERIIDNVKDQVKKLGITYPVAIDNNYTIWRNFDNQYWPAHYLVDAKGQIRYTHFGEGSYKVQEQMIQTLLNEAK ASQ
Sequences:
>Translated_403_residues MFLIAFLGGLLTVLSPCILPVVPFLFAGADRTRSSILLTLGGMALTFALISSLAVVSSEWVIQASNTGRHIALAVMVLFA LSLISARIGDWLARPFVLLGNRLDPDSRKKTGPMASIMIGVATGLLWAPCAGPILGVILTGAMLQGANAQTSLLLLAYGA GSALSLGTLIFAGRGLVNRLKPSIPFTGWFRRGAGVAVLATAAVIATGADNVLLANTSSQGVASVEKSVLENVPKVVDYF VSKVRADSIEDEAGKGTMPSLSGAVQWLNSPELTAESLRGKVVLVDFWTYDCINCQHTLPYVKEWEKKYGKDGLVVIGVH TPEYGYERIIDNVKDQVKKLGITYPVAIDNNYTIWRNFDNQYWPAHYLVDAKGQIRYTHFGEGSYKVQEQMIQTLLNEAK ASQ >Mature_403_residues MFLIAFLGGLLTVLSPCILPVVPFLFAGADRTRSSILLTLGGMALTFALISSLAVVSSEWVIQASNTGRHIALAVMVLFA LSLISARIGDWLARPFVLLGNRLDPDSRKKTGPMASIMIGVATGLLWAPCAGPILGVILTGAMLQGANAQTSLLLLAYGA GSALSLGTLIFAGRGLVNRLKPSIPFTGWFRRGAGVAVLATAAVIATGADNVLLANTSSQGVASVEKSVLENVPKVVDYF VSKVRADSIEDEAGKGTMPSLSGAVQWLNSPELTAESLRGKVVLVDFWTYDCINCQHTLPYVKEWEKKYGKDGLVVIGVH TPEYGYERIIDNVKDQVKKLGITYPVAIDNNYTIWRNFDNQYWPAHYLVDAKGQIRYTHFGEGSYKVQEQMIQTLLNEAK ASQ
Specific function: Unknown
COG id: COG0526
COG function: function code OC; Thiol-disulfide isomerase and thioredoxins
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 thioredoxin domain [H]
Homologues:
Organism=Homo sapiens, GI42476013, Length=130, Percent_Identity=35.3846153846154, Blast_Score=102, Evalue=5e-22, Organism=Drosophila melanogaster, GI116007528, Length=201, Percent_Identity=27.8606965174129, Blast_Score=89, Evalue=4e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000866 - InterPro: IPR003834 - InterPro: IPR017936 - InterPro: IPR012336 - InterPro: IPR012335 [H]
Pfam domain/function: PF00578 AhpC-TSA; PF02683 DsbD [H]
EC number: NA
Molecular weight: Translated: 43451; Mature: 43451
Theoretical pI: Translated: 8.79; Mature: 8.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFLIAFLGGLLTVLSPCILPVVPFLFAGADRTRSSILLTLGGMALTFALISSLAVVSSEW CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCE VIQASNTGRHIALAVMVLFALSLISARIGDWLARPFVLLGNRLDPDSRKKTGPMASIMIG EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCHHHHHHH VATGLLWAPCAGPILGVILTGAMLQGANAQTSLLLLAYGAGSALSLGTLIFAGRGLVNRL HHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCHHHHC KPSIPFTGWFRRGAGVAVLATAAVIATGADNVLLANTSSQGVASVEKSVLENVPKVVDYF CCCCCCCHHHHCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHH VSKVRADSIEDEAGKGTMPSLSGAVQWLNSPELTAESLRGKVVLVDFWTYDCINCQHTLP HHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHCCCEEEEEECCCCCCCCCCCCH YVKEWEKKYGKDGLVVIGVHTPEYGYERIIDNVKDQVKKLGITYPVAIDNNYTIWRNFDN HHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEECCCC QYWPAHYLVDAKGQIRYTHFGEGSYKVQEQMIQTLLNEAKASQ CCCCEEEEEECCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MFLIAFLGGLLTVLSPCILPVVPFLFAGADRTRSSILLTLGGMALTFALISSLAVVSSEW CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCE VIQASNTGRHIALAVMVLFALSLISARIGDWLARPFVLLGNRLDPDSRKKTGPMASIMIG EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCHHHHHHH VATGLLWAPCAGPILGVILTGAMLQGANAQTSLLLLAYGAGSALSLGTLIFAGRGLVNRL HHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCHHHHC KPSIPFTGWFRRGAGVAVLATAAVIATGADNVLLANTSSQGVASVEKSVLENVPKVVDYF CCCCCCCHHHHCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHH VSKVRADSIEDEAGKGTMPSLSGAVQWLNSPELTAESLRGKVVLVDFWTYDCINCQHTLP HHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHCCCEEEEEECCCCCCCCCCCCH YVKEWEKKYGKDGLVVIGVHTPEYGYERIIDNVKDQVKKLGITYPVAIDNNYTIWRNFDN HHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEECCCC QYWPAHYLVDAKGQIRYTHFGEGSYKVQEQMIQTLLNEAKASQ CCCCEEEEEECCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 12788972 [H]