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The map label for this gene is tdcF [C]

Identifier: 77461773

GI number: 77461773

Start: 6220572

End: 6220952

Strand: Direct

Name: tdcF [C]

Synonym: Pfl01_5552

Alternate gene names: 77461773

Gene position: 6220572-6220952 (Clockwise)

Preceding gene: 77461772

Following gene: 77461774

Centisome position: 96.62

GC content: 58.27

Gene sequence:

>381_bases
ATGACCAAAACCGTTATCACCAGCGACAAGGCCCCGGCCGCCATCGGTACTTACTCTCAGGCGATCAAGGCCGGTAACAC
CGTTTACATGTCGGGGCAGATTCCCCTCGATCCAAAAACCATGGAACTGGTCGAAGGCTTCGAAGCCCAGACCGTCCAGG
TGTTCGAGAACCTGAAAGCCGTGGCCGAAGCCGCCGGCGGTTCGTTCAAGGACATCGTCAAGCTGAACATCTTCCTCACC
GACCTGAGCCACTTCGCCAAGGTCAACGAGATCATGGGCAAGTACTTCGACCAGCCGTACCCGGCGCGCGCCGCCATCGG
CGTGGCAGCCCTGCCAAAGGGTTCGCAGGTTGAAATGGATGCCATTCTGGTCATCGAGTAA

Upstream 100 bases:

>100_bases
TGTGCACCTGGCCCGCGTGATCAAGAAACTGCGCGCCCTGACCGGGGTGATCCGCATCACCCGCATGCGTGCATAACCAC
CTAATTACAAGGAGTCATTC

Downstream 100 bases:

>100_bases
TGCGCACGGCGCGGCCTCAGACGCCGCGCCGATTGCTCTGCGGTAAAGAAAAGGTTTTGAAAGGATTCCACCATGCGCAA
AGCGCTTGCTCTCTCGCTGC

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 126; Mature: 125

Protein sequence:

>126_residues
MTKTVITSDKAPAAIGTYSQAIKAGNTVYMSGQIPLDPKTMELVEGFEAQTVQVFENLKAVAEAAGGSFKDIVKLNIFLT
DLSHFAKVNEIMGKYFDQPYPARAAIGVAALPKGSQVEMDAILVIE

Sequences:

>Translated_126_residues
MTKTVITSDKAPAAIGTYSQAIKAGNTVYMSGQIPLDPKTMELVEGFEAQTVQVFENLKAVAEAAGGSFKDIVKLNIFLT
DLSHFAKVNEIMGKYFDQPYPARAAIGVAALPKGSQVEMDAILVIE
>Mature_125_residues
TKTVITSDKAPAAIGTYSQAIKAGNTVYMSGQIPLDPKTMELVEGFEAQTVQVFENLKAVAEAAGGSFKDIVKLNIFLTD
LSHFAKVNEIMGKYFDQPYPARAAIGVAALPKGSQVEMDAILVIE

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=125, Percent_Identity=44.8, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI87082213, Length=125, Percent_Identity=42.4, Blast_Score=107, Evalue=2e-25,
Organism=Escherichia coli, GI87082396, Length=127, Percent_Identity=44.8818897637795, Blast_Score=105, Evalue=1e-24,
Organism=Escherichia coli, GI1787245, Length=123, Percent_Identity=31.7073170731707, Blast_Score=62, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI71982075, Length=124, Percent_Identity=51.6129032258064, Blast_Score=136, Evalue=2e-33,
Organism=Caenorhabditis elegans, GI71982068, Length=124, Percent_Identity=51.6129032258064, Blast_Score=136, Evalue=3e-33,
Organism=Caenorhabditis elegans, GI25148896, Length=124, Percent_Identity=51.6129032258064, Blast_Score=136, Evalue=3e-33,
Organism=Saccharomyces cerevisiae, GI6322138, Length=123, Percent_Identity=40.650406504065, Blast_Score=103, Evalue=8e-24,
Organism=Saccharomyces cerevisiae, GI6320899, Length=102, Percent_Identity=47.0588235294118, Blast_Score=98, Evalue=5e-22,
Organism=Drosophila melanogaster, GI19921376, Length=123, Percent_Identity=37.3983739837398, Blast_Score=88, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13497; Mature: 13366

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKTVITSDKAPAAIGTYSQAIKAGNTVYMSGQIPLDPKTMELVEGFEAQTVQVFENLKA
CCCEEECCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHCCCCHHHHHHHHHHHH
VAEAAGGSFKDIVKLNIFLTDLSHFAKVNEIMGKYFDQPYPARAAIGVAALPKGSQVEMD
HHHHCCCCHHHHHEEHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCEEECCCCCCEEEE
AILVIE
EEEEEC
>Mature Secondary Structure 
TKTVITSDKAPAAIGTYSQAIKAGNTVYMSGQIPLDPKTMELVEGFEAQTVQVFENLKA
CCEEECCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHCCCCHHHHHHHHHHHH
VAEAAGGSFKDIVKLNIFLTDLSHFAKVNEIMGKYFDQPYPARAAIGVAALPKGSQVEMD
HHHHCCCCHHHHHEEHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCEEECCCCCCEEEE
AILVIE
EEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2722750 [H]