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The map label for this gene is yohD [H]

Identifier: 77461687

GI number: 77461687

Start: 6134262

End: 6134918

Strand: Direct

Name: yohD [H]

Synonym: Pfl01_5466

Alternate gene names: 77461687

Gene position: 6134262-6134918 (Clockwise)

Preceding gene: 77461684

Following gene: 77461689

Centisome position: 95.28

GC content: 61.64

Gene sequence:

>657_bases
ATGCTCCAACAATTTCTGCATGACTTCGGCTACTTTGCCCTGTTTCTCGGGACGTTTTTCGAAGGCGAAACCATCCTGGT
GCTCGCGGGCTTCCTCGCGTTCCGTGAATACATGGACATCAAACTGGTGGTGGTCGTGGCGTTCTTCGGCAGTTATGCCG
GCGATCAGCTGTGGTACTTCCTGGGCCGCAAGCACGGGCGCAAGTTGCTGGCGCGCAAACCGCGCTGGCAGATGATGGGC
GACCGCGCGCTGGAACACATCCGCAAGCACCCGGACATCTGGGTCCTGAGCTTTCGCTTCGTGTACGGACTGCGCACGGT
GATGCCGGTGGCAATCGGCCTCTCGGGCTATCCGCCGGGACGCTATCTGCTGCTGAACGGGATTGGCGCGGCGATCTGGG
CCACCGCCCTGGCCGCCGCCGCTTACCATTTCGGCGCCGTGCTCGAAGGCATGCTCGGCAGCATCAAGAAGTATGAGTTG
TGGGTGCTGGGCGCGCTGCTGGTACTCGGCCTAGGCCTGTGGCTGCGCCGCCGGTTCAAGAATGCCCGGCTGGCGAAAAA
GGTTTACGAGGAAGAACAGGCCGAGCTGCTGGCCAAGGCCGAACGACACAAAACCGAAATGACCAACGCCGCCGATCCTA
AGACGCCAGCCGAGTAA

Upstream 100 bases:

>100_bases
TTGTCCGTGTAGGAAATGTTCACGTCGAGACACATTTCGACACTTTCCTGAATGTGTCCGAAGGGTTAGGCTGCGCGTTC
ATTTCGCCAGCACCCAGACA

Downstream 100 bases:

>100_bases
GTCGCTGGCGACAGCCATACAGCCCGATGCCGCTGAGCACGCTGTAACTGAGCAGGCCGACCCACATCCCCGGGCTGGCC
GGCCACAGCCCGACCAGCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MLQQFLHDFGYFALFLGTFFEGETILVLAGFLAFREYMDIKLVVVVAFFGSYAGDQLWYFLGRKHGRKLLARKPRWQMMG
DRALEHIRKHPDIWVLSFRFVYGLRTVMPVAIGLSGYPPGRYLLLNGIGAAIWATALAAAAYHFGAVLEGMLGSIKKYEL
WVLGALLVLGLGLWLRRRFKNARLAKKVYEEEQAELLAKAERHKTEMTNAADPKTPAE

Sequences:

>Translated_218_residues
MLQQFLHDFGYFALFLGTFFEGETILVLAGFLAFREYMDIKLVVVVAFFGSYAGDQLWYFLGRKHGRKLLARKPRWQMMG
DRALEHIRKHPDIWVLSFRFVYGLRTVMPVAIGLSGYPPGRYLLLNGIGAAIWATALAAAAYHFGAVLEGMLGSIKKYEL
WVLGALLVLGLGLWLRRRFKNARLAKKVYEEEQAELLAKAERHKTEMTNAADPKTPAE
>Mature_218_residues
MLQQFLHDFGYFALFLGTFFEGETILVLAGFLAFREYMDIKLVVVVAFFGSYAGDQLWYFLGRKHGRKLLARKPRWQMMG
DRALEHIRKHPDIWVLSFRFVYGLRTVMPVAIGLSGYPPGRYLLLNGIGAAIWATALAAAAYHFGAVLEGMLGSIKKYEL
WVLGALLVLGLGLWLRRRFKNARLAKKVYEEEQAELLAKAERHKTEMTNAADPKTPAE

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI87082056, Length=157, Percent_Identity=36.3057324840764, Blast_Score=100, Evalue=5e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 24788; Mature: 24788

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQQFLHDFGYFALFLGTFFEGETILVLAGFLAFREYMDIKLVVVVAFFGSYAGDQLWYF
CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
LGRKHGRKLLARKPRWQMMGDRALEHIRKHPDIWVLSFRFVYGLRTVMPVAIGLSGYPPG
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCC
RYLLLNGIGAAIWATALAAAAYHFGAVLEGMLGSIKKYELWVLGALLVLGLGLWLRRRFK
CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NARLAKKVYEEEQAELLAKAERHKTEMTNAADPKTPAE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MLQQFLHDFGYFALFLGTFFEGETILVLAGFLAFREYMDIKLVVVVAFFGSYAGDQLWYF
CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
LGRKHGRKLLARKPRWQMMGDRALEHIRKHPDIWVLSFRFVYGLRTVMPVAIGLSGYPPG
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCC
RYLLLNGIGAAIWATALAAAAYHFGAVLEGMLGSIKKYELWVLGALLVLGLGLWLRRRFK
CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NARLAKKVYEEEQAELLAKAERHKTEMTNAADPKTPAE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]