| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is dhfrIII [H]
Identifier: 77461582
GI number: 77461582
Start: 6022221
End: 6022733
Strand: Reverse
Name: dhfrIII [H]
Synonym: Pfl01_5361
Alternate gene names: 77461582
Gene position: 6022733-6022221 (Counterclockwise)
Preceding gene: 77461585
Following gene: 77461580
Centisome position: 93.54
GC content: 60.82
Gene sequence:
>513_bases ATGACTAAATCACTCCCCCTCAGCCTGATTGCAGCCCTCGGTGAAAACCGTGTGATCGGCGTCGACAACAGCATGCCCTG GCACCTGCCGGGGGACTTCAAATACTTCAAGGCCACGACGCTCGGCAAGCCGATCATCATGGGCCGCAAGACCTGGGACT CGCTGGGTCGCCCGTTGCCGGGCCGTCTGAATATCGTGGTCAGCCGTCAGGCCGGTCTGGTGCTGGAGGGCGCGGAAGTC TATCCGTCGCTGGAAGCGGCCGTGGTTCGCGCCGAAGAATGGGCGAAAGATCAGGGCGTCGATGAGTTGATGCTGATTGG CGGGGCGCAGTTGTATGCGCAGGGGCTGGCGCAGGCGGATCGTCTGTATCTGACCCGTGTGGCACTGAGCCCGGAAGGCG ATGCGTGGTTTCCGGAGTTCGATCTGAACCAGTGGAAGCTGGTGTCGAACGTGCCGAATCCGGCTGAAGGCGACAAACCG GCTTACAATTTCGAAGTCTGGGAAAAAGCCTGA
Upstream 100 bases:
>100_bases AGTCAGTTCAGTCACGCGGCATCCCGTTGCTTGATTGAGCCGTGAGCATAACCGCTGTGGCGCTTATCGGGGTAAGGGCG GCTCTGGTATCCTCGCCGGC
Downstream 100 bases:
>100_bases ACCTGGGGCGAGGGAGCACGCTCCCTCGCCACAACGTCAATCAAGCCTGAGCAAGCTCCGCATGCTCATCGGCATCCAGC AGTGCCTTGTCGGTCTGCTG
Product: dihydrofolate reductase
Products: NA
Alternate protein names: Dihydrofolate reductase type III [H]
Number of amino acids: Translated: 170; Mature: 169
Protein sequence:
>170_residues MTKSLPLSLIAALGENRVIGVDNSMPWHLPGDFKYFKATTLGKPIIMGRKTWDSLGRPLPGRLNIVVSRQAGLVLEGAEV YPSLEAAVVRAEEWAKDQGVDELMLIGGAQLYAQGLAQADRLYLTRVALSPEGDAWFPEFDLNQWKLVSNVPNPAEGDKP AYNFEVWEKA
Sequences:
>Translated_170_residues MTKSLPLSLIAALGENRVIGVDNSMPWHLPGDFKYFKATTLGKPIIMGRKTWDSLGRPLPGRLNIVVSRQAGLVLEGAEV YPSLEAAVVRAEEWAKDQGVDELMLIGGAQLYAQGLAQADRLYLTRVALSPEGDAWFPEFDLNQWKLVSNVPNPAEGDKP AYNFEVWEKA >Mature_169_residues TKSLPLSLIAALGENRVIGVDNSMPWHLPGDFKYFKATTLGKPIIMGRKTWDSLGRPLPGRLNIVVSRQAGLVLEGAEVY PSLEAAVVRAEEWAKDQGVDELMLIGGAQLYAQGLAQADRLYLTRVALSPEGDAWFPEFDLNQWKLVSNVPNPAEGDKPA YNFEVWEKA
Specific function: Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis [H]
COG id: COG0262
COG function: function code H; Dihydrofolate reductase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 DHFR (dihydrofolate reductase) domain [H]
Homologues:
Organism=Homo sapiens, GI4503323, Length=181, Percent_Identity=34.2541436464088, Blast_Score=91, Evalue=5e-19, Organism=Homo sapiens, GI28827793, Length=183, Percent_Identity=33.879781420765, Blast_Score=86, Evalue=2e-17, Organism=Escherichia coli, GI1786233, Length=164, Percent_Identity=42.6829268292683, Blast_Score=134, Evalue=3e-33, Organism=Caenorhabditis elegans, GI17505899, Length=178, Percent_Identity=31.4606741573034, Blast_Score=76, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6324810, Length=136, Percent_Identity=31.6176470588235, Blast_Score=68, Evalue=8e-13, Organism=Drosophila melanogaster, GI116008026, Length=148, Percent_Identity=33.7837837837838, Blast_Score=79, Evalue=1e-15, Organism=Drosophila melanogaster, GI24647458, Length=148, Percent_Identity=33.7837837837838, Blast_Score=79, Evalue=1e-15,
Paralogues:
None
Copy number: 640 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 10,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012259 - InterPro: IPR017925 - InterPro: IPR001796 [H]
Pfam domain/function: PF00186 DHFR_1 [H]
EC number: =1.5.1.3 [H]
Molecular weight: Translated: 18752; Mature: 18620
Theoretical pI: Translated: 4.81; Mature: 4.81
Prosite motif: PS00075 DHFR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKSLPLSLIAALGENRVIGVDNSMPWHLPGDFKYFKATTLGKPIIMGRKTWDSLGRPLP CCCCCHHHHHHHCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCEEECCCCHHHHCCCCC GRLNIVVSRQAGLVLEGAEVYPSLEAAVVRAEEWAKDQGVDELMLIGGAQLYAQGLAQAD CCEEEEEECCCCEEEECHHHCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHH RLYLTRVALSPEGDAWFPEFDLNQWKLVSNVPNPAEGDKPAYNFEVWEKA HEEEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEECC >Mature Secondary Structure TKSLPLSLIAALGENRVIGVDNSMPWHLPGDFKYFKATTLGKPIIMGRKTWDSLGRPLP CCCCHHHHHHHCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCEEECCCCHHHHCCCCC GRLNIVVSRQAGLVLEGAEVYPSLEAAVVRAEEWAKDQGVDELMLIGGAQLYAQGLAQAD CCEEEEEECCCCEEEECHHHCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHH RLYLTRVALSPEGDAWFPEFDLNQWKLVSNVPNPAEGDKPAYNFEVWEKA HEEEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2840679; 6371010 [H]