Click here to switch to the map view.

The map label for this gene is glxA [H]

Identifier: 77461450

GI number: 77461450

Start: 5884237

End: 5885181

Strand: Reverse

Name: glxA [H]

Synonym: Pfl01_5229

Alternate gene names: 77461450

Gene position: 5885181-5884237 (Counterclockwise)

Preceding gene: 77461457

Following gene: 77461449

Centisome position: 91.41

GC content: 62.75

Gene sequence:

>945_bases
ATGTCCCAGGATTTCTACTTTCTGTTGATGCCGGGTTTTTCCGCCATCGGGTTCATCTCTGCGATCGAACCGTTGCGAGT
GGCCAACCGCTTTCGCGGCGAGCTGTACCGCTGGCATGTGTTGAGCGCCGATGGCGGGGCGGTGCTGGCAAGCAACGGGA
TGTCGGTCAACGCCGATGCGGCGCTGGAGCCGCTGAAGAAAGGTGCGACGCTGCTGGTGGTCGCCGGTTTCGAACCGCTG
AAGTTCGCCACCCCGGCGCTGGAGCACTGGCTGCGACGGCTGGACAACGAAGGCGTGACCCTCGGCGCCATCGACACCGG
CAGCTTCGTCCTTGCCGAGGCGGGCCTGCTCGATGGCCATCGCCTGACCCTGCACTGGGAAGCCATCGACGCCTTCAAGG
AATCTTATCCACAGCTCAGCGTCACCCAGGAGCTGTTCGAGATCGACCGCCGACGCATCACGTCTGCCGGCGGCACCGCG
TCCATCGACCTGATGCTCGACCTGATCGCTCAGGCCCACGGCCCGCAACTGGCGATCCAGGTCAGCGAGCAGTTTGTATT
GGGGCGGATTCGTCCGCGCAAGGACCACCAGCGCATGGAGGTCGCCACGCGCTACGGCATCAGCAACAAGAAGCTGGTGC
ATGTGATCGGCGAGATGGAGCAGCACAGCGAACCGCCGCTGACAACTTTGGAACTGGCGGAATCGATCAAGGTGACCCGG
CGGCAACTTGAGCGGTTGTTCCGTCTGCACCTGAACGACACACCGAGCAATTTCTATCTGCGCCTAAGACTGGAAAAGGC
CCGTCAGCTGTTGCGCCAGACCGACATGAGCGTGCTGGAAGTCAGCATCGCCTGCGGGTTTGAATCCCCGTCGTATTTCA
CCCGCAGCTACCGGGCGAAGTTTGCCCGGTGTCCGCGGGAGGATCGGCGACGGGAGGCCGTTTGA

Upstream 100 bases:

>100_bases
TGCGGCGACCAGCTCTTGCACTGCAGCGACCTGTGCTCTTGAATGCCGCTCGCAACTGGCGTATCAACGTTGCACGCTAC
CCGCTGACCGAGTGCGCGCC

Downstream 100 bases:

>100_bases
CGGACGATTATAGTTAATTATACTTTCAGGTATAAATTACAGTCGTTTGAATAATTGAGTGTAAAACCATGTCCCGAAAC
AACGGCTTCGTTTTCCGCCG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 313

Protein sequence:

>314_residues
MSQDFYFLLMPGFSAIGFISAIEPLRVANRFRGELYRWHVLSADGGAVLASNGMSVNADAALEPLKKGATLLVVAGFEPL
KFATPALEHWLRRLDNEGVTLGAIDTGSFVLAEAGLLDGHRLTLHWEAIDAFKESYPQLSVTQELFEIDRRRITSAGGTA
SIDLMLDLIAQAHGPQLAIQVSEQFVLGRIRPRKDHQRMEVATRYGISNKKLVHVIGEMEQHSEPPLTTLELAESIKVTR
RQLERLFRLHLNDTPSNFYLRLRLEKARQLLRQTDMSVLEVSIACGFESPSYFTRSYRAKFARCPREDRRREAV

Sequences:

>Translated_314_residues
MSQDFYFLLMPGFSAIGFISAIEPLRVANRFRGELYRWHVLSADGGAVLASNGMSVNADAALEPLKKGATLLVVAGFEPL
KFATPALEHWLRRLDNEGVTLGAIDTGSFVLAEAGLLDGHRLTLHWEAIDAFKESYPQLSVTQELFEIDRRRITSAGGTA
SIDLMLDLIAQAHGPQLAIQVSEQFVLGRIRPRKDHQRMEVATRYGISNKKLVHVIGEMEQHSEPPLTTLELAESIKVTR
RQLERLFRLHLNDTPSNFYLRLRLEKARQLLRQTDMSVLEVSIACGFESPSYFTRSYRAKFARCPREDRRREAV
>Mature_313_residues
SQDFYFLLMPGFSAIGFISAIEPLRVANRFRGELYRWHVLSADGGAVLASNGMSVNADAALEPLKKGATLLVVAGFEPLK
FATPALEHWLRRLDNEGVTLGAIDTGSFVLAEAGLLDGHRLTLHWEAIDAFKESYPQLSVTQELFEIDRRRITSAGGTAS
IDLMLDLIAQAHGPQLAIQVSEQFVLGRIRPRKDHQRMEVATRYGISNKKLVHVIGEMEQHSEPPLTTLELAESIKVTRR
QLERLFRLHLNDTPSNFYLRLRLEKARQLLRQTDMSVLEVSIACGFESPSYFTRSYRAKFARCPREDRRREAV

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 35449; Mature: 35318

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQDFYFLLMPGFSAIGFISAIEPLRVANRFRGELYRWHVLSADGGAVLASNGMSVNADA
CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCEEEECCCCEECCHH
ALEPLKKGATLLVVAGFEPLKFATPALEHWLRRLDNEGVTLGAIDTGSFVLAEAGLLDGH
HHHHHHCCCEEEEEECCCCHHHCCHHHHHHHHHHCCCCEEEEEECCCCEEEEECCCCCCC
RLTLHWEAIDAFKESYPQLSVTQELFEIDRRRITSAGGTASIDLMLDLIAQAHGPQLAIQ
EEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEE
VSEQFVLGRIRPRKDHQRMEVATRYGISNKKLVHVIGEMEQHSEPPLTTLELAESIKVTR
ECCHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
RQLERLFRLHLNDTPSNFYLRLRLEKARQLLRQTDMSVLEVSIACGFESPSYFTRSYRAK
HHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHCCHHHEEEEEEECCCCCHHHHHHHHHH
FARCPREDRRREAV
HHHCCCHHHHCCCC
>Mature Secondary Structure 
SQDFYFLLMPGFSAIGFISAIEPLRVANRFRGELYRWHVLSADGGAVLASNGMSVNADA
CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCEEEECCCCEECCHH
ALEPLKKGATLLVVAGFEPLKFATPALEHWLRRLDNEGVTLGAIDTGSFVLAEAGLLDGH
HHHHHHCCCEEEEEECCCCHHHCCHHHHHHHHHHCCCCEEEEEECCCCEEEEECCCCCCC
RLTLHWEAIDAFKESYPQLSVTQELFEIDRRRITSAGGTASIDLMLDLIAQAHGPQLAIQ
EEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEE
VSEQFVLGRIRPRKDHQRMEVATRYGISNKKLVHVIGEMEQHSEPPLTTLELAESIKVTR
ECCHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
RQLERLFRLHLNDTPSNFYLRLRLEKARQLLRQTDMSVLEVSIACGFESPSYFTRSYRAK
HHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHCCHHHEEEEEEECCCCCHHHHHHHHHH
FARCPREDRRREAV
HHHCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]