| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is 77461446
Identifier: 77461446
GI number: 77461446
Start: 5880918
End: 5881895
Strand: Reverse
Name: 77461446
Synonym: Pfl01_5225
Alternate gene names: NA
Gene position: 5881895-5880918 (Counterclockwise)
Preceding gene: 77461449
Following gene: 77461445
Centisome position: 91.36
GC content: 60.22
Gene sequence:
>978_bases ATGAGCCCAGCCGAATTACACGCCGACAGCATCGTTATCGACGGTCTGATCATTGCCAAATGGAACCGCGAGCTGTTCGA AGACATGCGCAAGGGCGGTCTGACGGCGGCCAACTGCACCGTGTCGGTGTGGGAGGGCTTTCAGGCCACGGTCAACAACA TCGCCGCCAGCCAGAAACTGATTCGCGAAAACAGCGACCTGGTGATCCCCGTCCGCACCACCGCCGACATCCGCAAGGCC AAGGAGCAGGGCAAGACCGGCATCCTCTTCGGCTTCCAGAACGCCCATGCGTTCGAAGACCAGATCGGTTATGTCGAGGT GTTCAAGCAGCTCGGCGTCGGCATCGTACAGATGTGCTACAACACCCAGAACCTGGTGGGCACCGGTTGCTACGAACGTG ACGGCGGCCTGTCGGGCTTCGGTCGCGAAATCGTCGCCGAGATGAACCGTGTCGGCGTCATGTGCGACCTGTCCCACGTC GGCTCCAAGACCTCCGAAGAAGTCATCCTCGAATCGAAAAAACCGGTCTGCTATTCCCACTGCCTGCCGTCGGGGCTGAA AGAGCACCCGCGCAACAAGTCCGATGAAGAGCTGAAGTTCATCGCTGACCACGGCGGTTTCGTCGGCGTGACCATGTTCG CGCCGTTCCTGGCCAAGGGCATCGATTCGACCATCGACGACTACGCCGAAGCCATCGAATACACCATGAACATCGTCGGC GAAGACGCCATCGGCATCGGCACCGACTTCACCCAGGGTCACGGCCAGGACTTCTTCGAATACCTGACCCACGACAAGGG CTACGCCCGCCGTCTGACCAACTTCGGCAAGATCATCAACCCGCTGGGCATCCGCACCGTCGGCGAGTTCCCGAACCTGA CCGAAACCCTGCTCAAGCGCGGCCACTCCGAGCGCGTGGTACGCAAGATCATGGGCGAAAACTGGGTGAACGTCCTCAAA GACGTTTGGGGCGAGTAA
Upstream 100 bases:
>100_bases TGTCGTTTTTGCACCCGGCTGGTCGCGCACCGAGGCATATGCTGGCCCCAAAGCGCCGGCAGACGATTCGGCGCATGAAT CGCCAATAAGGGGACGCCTG
Downstream 100 bases:
>100_bases GCCGCCGCTTCCCGAATACTTTCCCCCGGCCGTCCGTGCCGGGGGCAACACCAAAATTTTCTGGAGTTAAGTTTCCATGG CCAAGATCGCCCCGCAATTG
Product: peptidase M19, renal dipeptidase
Products: NA
Alternate protein names: ORF X [H]
Number of amino acids: Translated: 325; Mature: 324
Protein sequence:
>325_residues MSPAELHADSIVIDGLIIAKWNRELFEDMRKGGLTAANCTVSVWEGFQATVNNIAASQKLIRENSDLVIPVRTTADIRKA KEQGKTGILFGFQNAHAFEDQIGYVEVFKQLGVGIVQMCYNTQNLVGTGCYERDGGLSGFGREIVAEMNRVGVMCDLSHV GSKTSEEVILESKKPVCYSHCLPSGLKEHPRNKSDEELKFIADHGGFVGVTMFAPFLAKGIDSTIDDYAEAIEYTMNIVG EDAIGIGTDFTQGHGQDFFEYLTHDKGYARRLTNFGKIINPLGIRTVGEFPNLTETLLKRGHSERVVRKIMGENWVNVLK DVWGE
Sequences:
>Translated_325_residues MSPAELHADSIVIDGLIIAKWNRELFEDMRKGGLTAANCTVSVWEGFQATVNNIAASQKLIRENSDLVIPVRTTADIRKA KEQGKTGILFGFQNAHAFEDQIGYVEVFKQLGVGIVQMCYNTQNLVGTGCYERDGGLSGFGREIVAEMNRVGVMCDLSHV GSKTSEEVILESKKPVCYSHCLPSGLKEHPRNKSDEELKFIADHGGFVGVTMFAPFLAKGIDSTIDDYAEAIEYTMNIVG EDAIGIGTDFTQGHGQDFFEYLTHDKGYARRLTNFGKIINPLGIRTVGEFPNLTETLLKRGHSERVVRKIMGENWVNVLK DVWGE >Mature_324_residues SPAELHADSIVIDGLIIAKWNRELFEDMRKGGLTAANCTVSVWEGFQATVNNIAASQKLIRENSDLVIPVRTTADIRKAK EQGKTGILFGFQNAHAFEDQIGYVEVFKQLGVGIVQMCYNTQNLVGTGCYERDGGLSGFGREIVAEMNRVGVMCDLSHVG SKTSEEVILESKKPVCYSHCLPSGLKEHPRNKSDEELKFIADHGGFVGVTMFAPFLAKGIDSTIDDYAEAIEYTMNIVGE DAIGIGTDFTQGHGQDFFEYLTHDKGYARRLTNFGKIINPLGIRTVGEFPNLTETLLKRGHSERVVRKIMGENWVNVLKD VWGE
Specific function: Unknown
COG id: COG2355
COG function: function code E; Zn-dependent dipeptidase, microsomal dipeptidase homolog
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M19 family [H]
Homologues:
Organism=Homo sapiens, GI189458885, Length=291, Percent_Identity=24.3986254295533, Blast_Score=107, Evalue=2e-23, Organism=Homo sapiens, GI4758190, Length=291, Percent_Identity=24.3986254295533, Blast_Score=107, Evalue=2e-23, Organism=Homo sapiens, GI11641269, Length=291, Percent_Identity=23.7113402061856, Blast_Score=98, Evalue=1e-20, Organism=Homo sapiens, GI193211608, Length=245, Percent_Identity=24.0816326530612, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI193211610, Length=245, Percent_Identity=24.0816326530612, Blast_Score=80, Evalue=3e-15, Organism=Drosophila melanogaster, GI281362638, Length=318, Percent_Identity=25.4716981132075, Blast_Score=115, Evalue=3e-26, Organism=Drosophila melanogaster, GI281362636, Length=318, Percent_Identity=25.4716981132075, Blast_Score=115, Evalue=3e-26, Organism=Drosophila melanogaster, GI161083233, Length=315, Percent_Identity=25.7142857142857, Blast_Score=108, Evalue=5e-24, Organism=Drosophila melanogaster, GI221475880, Length=317, Percent_Identity=24.6056782334385, Blast_Score=103, Evalue=2e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008257 [H]
Pfam domain/function: PF01244 Peptidase_M19 [H]
EC number: NA
Molecular weight: Translated: 35958; Mature: 35827
Theoretical pI: Translated: 5.43; Mature: 5.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPAELHADSIVIDGLIIAKWNRELFEDMRKGGLTAANCTVSVWEGFQATVNNIAASQKL CCCHHHCCCCEEECCEEEECCCHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHHHHHHH IRENSDLVIPVRTTADIRKAKEQGKTGILFGFQNAHAFEDQIGYVEVFKQLGVGIVQMCY HHCCCCEEEEECCHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH NTQNLVGTGCYERDGGLSGFGREIVAEMNRVGVMCDLSHVGSKTSEEVILESKKPVCYSH CCCHHHCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEHHHHCCCCCHHHHHCCCCCHHHHH CLPSGLKEHPRNKSDEELKFIADHGGFVGVTMFAPFLAKGIDSTIDDYAEAIEYTMNIVG HCCHHHHHCCCCCCCHHHHEEECCCCEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC EDAIGIGTDFTQGHGQDFFEYLTHDKGYARRLTNFGKIINPLGIRTVGEFPNLTETLLKR CCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHC GHSERVVRKIMGENWVNVLKDVWGE CCHHHHHHHHHCCHHHHHHHHHHCC >Mature Secondary Structure SPAELHADSIVIDGLIIAKWNRELFEDMRKGGLTAANCTVSVWEGFQATVNNIAASQKL CCHHHCCCCEEECCEEEECCCHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHHHHHHH IRENSDLVIPVRTTADIRKAKEQGKTGILFGFQNAHAFEDQIGYVEVFKQLGVGIVQMCY HHCCCCEEEEECCHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH NTQNLVGTGCYERDGGLSGFGREIVAEMNRVGVMCDLSHVGSKTSEEVILESKKPVCYSH CCCHHHCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEHHHHCCCCCHHHHHCCCCCHHHHH CLPSGLKEHPRNKSDEELKFIADHGGFVGVTMFAPFLAKGIDSTIDDYAEAIEYTMNIVG HCCHHHHHCCCCCCCHHHHEEECCCCEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC EDAIGIGTDFTQGHGQDFFEYLTHDKGYARRLTNFGKIINPLGIRTVGEFPNLTETLLKR CCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHC GHSERVVRKIMGENWVNVLKDVWGE CCHHHHHHHHHCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1313537 [H]