| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is fct [H]
Identifier: 77461410
GI number: 77461410
Start: 5836559
End: 5838985
Strand: Direct
Name: fct [H]
Synonym: Pfl01_5189
Alternate gene names: 77461410
Gene position: 5836559-5838985 (Clockwise)
Preceding gene: 77461409
Following gene: 77461411
Centisome position: 90.65
GC content: 63.37
Gene sequence:
>2427_bases ATGTCCCGTTCGCTAGACACCTTGTTGCGCCCCAGTTTGCTGGCGGTCGCCATTGCCCTCTGCACCCCGCTGGCCAGCAG CCAACTGATCGCCGCTGAACAGGCGTCGAGCGTACGCGCCTACAACCTGCCGGCGGCTCCGTTGTCGACCACGCTGAACC AGATCGCCAGCCAGGGCGGCCTCACGCTGTCGCTGAACCCGTCGCTGGCGGCGGGCAAGACCTCGGCGCCGGTCAACGGC CAATATGACGCGGCCGGCGCCCTGCGCGCGGCACTGCGCGGCACCGGTCTGCAACTGGAACAGAGCGGCGCCGGCACCTA CACCCTGGTCGCCGTGCCGGAAGGCGTGATGGCCCTGCCGGAAACCTCGGTGATCGGCGTGGAAAACTACGAAAGCGCCT GGGGCCCGGTCGAAGGCTACACCGCCACCCGCACCGCCGCCGGCACCAAGACCGACACTGCACTGGTCGAAGCACCGCGT TCGATTTCGGTCGCCACTCGCCAGCAAATGGAAGACCGTGGCGTGCACAGCCTCGATGACGCCGTGCGCTACATGCCGGG CATCACCGCCAGCAGCTACGGCAGCGACACTCGCGCCGACTGGCTGCGCGTGCGCGGCTTCGAACCGACCCAGTTCCTCG ACGGCCTGCCCCTGCCAAAAGGCGTGTACGCCAACCCGAAACAGGAAACCTGGAACCTCGACCGCCTCGCCCTGCTGCGC GGCCCGGCCTCGTCGGTATACGGCCAGACCCCACCGGGCGGTTTGCTGGACATGGTCAGCCGTCGCCCGAGCGATGTGCA GAGCAACGAAATCCAGCTGCAATACGGCAGCGACAACCACCGCCAGATCAACTTCGCCAGCACCGGCAAGATCGATGACG CTGGCCAGTTTCTCTACGGCCTCAGCGGTGTGGTACGTGACAGCGGCACGCAGATCGACCACGTCGACAACAAGCGCTAC AACATCGCGCCGAGCCTGACCTGGAACATCGACGACGACACCAGATTCACCCTGCTGACCCAGTTCACCCGCGACGATAC CGGCATCACCAGCCAGTTCCTGCCGGTGCAGGGCACCAAGATCGACATGCCGTTCGGCAAGGTTTCCCATCACAAGAACC TCGGCGATCCGGACTGGGAATACTACGACCGCACCTACTACGCGTTGGGCTATGCCTTCGAACATCGCCTGAACGATGTG TGGCAGTTCAAGCAGAACCTGCGCTACACCAAGTCGGATCTGTCGTTCCAGGGCATCACCGTCGGCTCCTACCCGTTCAC TCAAGTGGACAATGACGGCAACGTCGGCCGCACGACCACCATCGTCGACGAAGACATCAGCCAGTTCGCCGTGGACAACA ACTTCCAGGCCGACTTCGCCACCGGCGACATCCGCCACACCCTGCTGCTGGGTCTGGATCACCAGCGCAGCAACACCAAC TACACCTCGATCTTCGGCAGCGCGCCGGAGATCAACGTGAACAATCCGATCCATGGTCAGCCGATCGTGCGTCCGGCGCG CTCCACCGCGTTCTATGACTACAACCAGAAGACCTACCAGACCGGCCTCTACGTTCAGGACCAGATGGCCCTGGACCAAT GGCGCCTGACCCTGGGCGGTCGTGAAGACTGGGTGCACACCAGCACGCAATTCATCAACAAGGGCGACGCCACCAACACC CAGCGTGACAAGGCGTTCAGCGGTAACGCGGCGATCAGCTATGTCTTCGACTCCGGTTTCGTGCCGTACCTGTCCTACGC CGAATCGTTCCAGCCGACCACTGGCGCCGACGCCTCGTCGACCGAATCGCTCAAACCGACCGAAGGCAAGCAGTGGGAAC TGGGCATCAAGTACCAGCCACCGGGCAGCAAGACCCTGCTGACGGCGGCCGTGTATGACCTGACCCAGAAAAACGTTTCG GTCAGCTCGTTCGTCAACGGCGTATCGATCACCAGCCAGACCGGCGAAGTGAAGGTCAAAGGCCTGGAGCTGGAAGCCGT CTCCGACGTCACCGATAACCTGAAGGTCATCGCCGCGTACACCCTGGCCAAATCCGAAGTGCAGAACGGCGCCGACAAGG GCAACCGCCTGCAACTGATGCCGAACCAGCAAGCCTCGCTGTGGGCCGATTACAGCTGGCACAGCGGTGTGCTCGACGGC TTCGGCATCGGCGCCGGCGCGCGCTACACCGGCAACACCTACGGCGACAAAGCCAATACCTGGCTGGGCAAGGCGGACGC GTACACCGTGTTCGACGCCGCCGTGCATTACGACCTCGGCCGTCTGGACAACAGCCTCAAAGGCGCGTCGCTGGCACTCA ACGCCACCAATTTGCTGGACAAGGACTACATCTCCACTTGCGACAGCTTCTACTGCTACTACGGCGACCAGCGCAGTGTC GTCGCCAGCGCCACTTACAAGTGGTAA
Upstream 100 bases:
>100_bases TCGTTCGTTAATCGAAATTATTTTCATCCAGCCCTATCACTTTTCGAATCTCGTCCGGCACACAGGCAATTGAGAAATAT TTCCATTCAGGAGCCGCCGT
Downstream 100 bases:
>100_bases GCGCCTGAGCTGAACAGGCCCTGCAACCAGGCCGTCCCTCGTGGACGGCTTGGGTGTTTTTGAAGGTCATGAAATGAAAA GTAAAACAATTCGCCGCTGG
Product: TonB-dependent siderophore receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 808; Mature: 807
Protein sequence:
>808_residues MSRSLDTLLRPSLLAVAIALCTPLASSQLIAAEQASSVRAYNLPAAPLSTTLNQIASQGGLTLSLNPSLAAGKTSAPVNG QYDAAGALRAALRGTGLQLEQSGAGTYTLVAVPEGVMALPETSVIGVENYESAWGPVEGYTATRTAAGTKTDTALVEAPR SISVATRQQMEDRGVHSLDDAVRYMPGITASSYGSDTRADWLRVRGFEPTQFLDGLPLPKGVYANPKQETWNLDRLALLR GPASSVYGQTPPGGLLDMVSRRPSDVQSNEIQLQYGSDNHRQINFASTGKIDDAGQFLYGLSGVVRDSGTQIDHVDNKRY NIAPSLTWNIDDDTRFTLLTQFTRDDTGITSQFLPVQGTKIDMPFGKVSHHKNLGDPDWEYYDRTYYALGYAFEHRLNDV WQFKQNLRYTKSDLSFQGITVGSYPFTQVDNDGNVGRTTTIVDEDISQFAVDNNFQADFATGDIRHTLLLGLDHQRSNTN YTSIFGSAPEINVNNPIHGQPIVRPARSTAFYDYNQKTYQTGLYVQDQMALDQWRLTLGGREDWVHTSTQFINKGDATNT QRDKAFSGNAAISYVFDSGFVPYLSYAESFQPTTGADASSTESLKPTEGKQWELGIKYQPPGSKTLLTAAVYDLTQKNVS VSSFVNGVSITSQTGEVKVKGLELEAVSDVTDNLKVIAAYTLAKSEVQNGADKGNRLQLMPNQQASLWADYSWHSGVLDG FGIGAGARYTGNTYGDKANTWLGKADAYTVFDAAVHYDLGRLDNSLKGASLALNATNLLDKDYISTCDSFYCYYGDQRSV VASATYKW
Sequences:
>Translated_808_residues MSRSLDTLLRPSLLAVAIALCTPLASSQLIAAEQASSVRAYNLPAAPLSTTLNQIASQGGLTLSLNPSLAAGKTSAPVNG QYDAAGALRAALRGTGLQLEQSGAGTYTLVAVPEGVMALPETSVIGVENYESAWGPVEGYTATRTAAGTKTDTALVEAPR SISVATRQQMEDRGVHSLDDAVRYMPGITASSYGSDTRADWLRVRGFEPTQFLDGLPLPKGVYANPKQETWNLDRLALLR GPASSVYGQTPPGGLLDMVSRRPSDVQSNEIQLQYGSDNHRQINFASTGKIDDAGQFLYGLSGVVRDSGTQIDHVDNKRY NIAPSLTWNIDDDTRFTLLTQFTRDDTGITSQFLPVQGTKIDMPFGKVSHHKNLGDPDWEYYDRTYYALGYAFEHRLNDV WQFKQNLRYTKSDLSFQGITVGSYPFTQVDNDGNVGRTTTIVDEDISQFAVDNNFQADFATGDIRHTLLLGLDHQRSNTN YTSIFGSAPEINVNNPIHGQPIVRPARSTAFYDYNQKTYQTGLYVQDQMALDQWRLTLGGREDWVHTSTQFINKGDATNT QRDKAFSGNAAISYVFDSGFVPYLSYAESFQPTTGADASSTESLKPTEGKQWELGIKYQPPGSKTLLTAAVYDLTQKNVS VSSFVNGVSITSQTGEVKVKGLELEAVSDVTDNLKVIAAYTLAKSEVQNGADKGNRLQLMPNQQASLWADYSWHSGVLDG FGIGAGARYTGNTYGDKANTWLGKADAYTVFDAAVHYDLGRLDNSLKGASLALNATNLLDKDYISTCDSFYCYYGDQRSV VASATYKW >Mature_807_residues SRSLDTLLRPSLLAVAIALCTPLASSQLIAAEQASSVRAYNLPAAPLSTTLNQIASQGGLTLSLNPSLAAGKTSAPVNGQ YDAAGALRAALRGTGLQLEQSGAGTYTLVAVPEGVMALPETSVIGVENYESAWGPVEGYTATRTAAGTKTDTALVEAPRS ISVATRQQMEDRGVHSLDDAVRYMPGITASSYGSDTRADWLRVRGFEPTQFLDGLPLPKGVYANPKQETWNLDRLALLRG PASSVYGQTPPGGLLDMVSRRPSDVQSNEIQLQYGSDNHRQINFASTGKIDDAGQFLYGLSGVVRDSGTQIDHVDNKRYN IAPSLTWNIDDDTRFTLLTQFTRDDTGITSQFLPVQGTKIDMPFGKVSHHKNLGDPDWEYYDRTYYALGYAFEHRLNDVW QFKQNLRYTKSDLSFQGITVGSYPFTQVDNDGNVGRTTTIVDEDISQFAVDNNFQADFATGDIRHTLLLGLDHQRSNTNY TSIFGSAPEINVNNPIHGQPIVRPARSTAFYDYNQKTYQTGLYVQDQMALDQWRLTLGGREDWVHTSTQFINKGDATNTQ RDKAFSGNAAISYVFDSGFVPYLSYAESFQPTTGADASSTESLKPTEGKQWELGIKYQPPGSKTLLTAAVYDLTQKNVSV SSFVNGVSITSQTGEVKVKGLELEAVSDVTDNLKVIAAYTLAKSEVQNGADKGNRLQLMPNQQASLWADYSWHSGVLDGF GIGAGARYTGNTYGDKANTWLGKADAYTVFDAAVHYDLGRLDNSLKGASLALNATNLLDKDYISTCDSFYCYYGDQRSVV ASATYKW
Specific function: Involved in the initial step of iron uptake by binding chrysobactin, an iron chelatin siderophore that allows the bacteria to extract iron from the environment [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1786344, Length=708, Percent_Identity=36.2994350282486, Blast_Score=425, Evalue=1e-120, Organism=Escherichia coli, GI1787024, Length=729, Percent_Identity=26.2002743484225, Blast_Score=160, Evalue=4e-40, Organism=Escherichia coli, GI1787344, Length=772, Percent_Identity=22.5388601036269, Blast_Score=114, Evalue=2e-26, Organism=Escherichia coli, GI1790743, Length=798, Percent_Identity=22.6817042606516, Blast_Score=106, Evalue=5e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 88089; Mature: 87958
Theoretical pI: Translated: 4.99; Mature: 4.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRSLDTLLRPSLLAVAIALCTPLASSQLIAAEQASSVRAYNLPAAPLSTTLNQIASQGG CCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHCCCEEEECCCCCHHHHHHHHHHHCCC LTLSLNPSLAAGKTSAPVNGQYDAAGALRAALRGTGLQLEQSGAGTYTLVAVPEGVMALP EEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCEEEEEECCCCCEECC ETSVIGVENYESAWGPVEGYTATRTAAGTKTDTALVEAPRSISVATRQQMEDRGVHSLDD CCEEEECCCCCCCCCCCCCCEEECCCCCCCCCHHHHHCCCCCHHHHHHHHHHCCCHHHHH AVRYMPGITASSYGSDTRADWLRVRGFEPTQFLDGLPLPKGVYANPKQETWNLDRLALLR HHHHCCCCCCCCCCCCCCCCCEEECCCCHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEC GPASSVYGQTPPGGLLDMVSRRPSDVQSNEIQLQYGSDNHRQINFASTGKIDDAGQFLYG CCHHHCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCHHHHHHH LSGVVRDSGTQIDHVDNKRYNIAPSLTWNIDDDTRFTLLTQFTRDDTGITSQFLPVQGTK HHHHCCCCCCEEECCCCCCEEECCEEEEECCCCCEEEEEEEECCCCCCCCCEEEECCCCE IDMPFGKVSHHKNLGDPDWEYYDRTYYALGYAFEHRLNDVWQFKQNLRYTKSDLSFQGIT EECCCCHHHCCCCCCCCCHHHHCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE VGSYPFTQVDNDGNVGRTTTIVDEDISQFAVDNNFQADFATGDIRHTLLLGLDHQRSNTN ECCCCCEEECCCCCCCCEEEEEHHHHHHHHCCCCCCCEECCCCCEEEEEEECCCCCCCCC YTSIFGSAPEINVNNPIHGQPIVRPARSTAFYDYNQKTYQTGLYVQDQMALDQWRLTLGG EEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEECCCEEEHHHHHHHEEEEECC REDWVHTSTQFINKGDATNTQRDKAFSGNAAISYVFDSGFVPYLSYAESFQPTTGADASS CCCCEECHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCCC TESLKPTEGKQWELGIKYQPPGSKTLLTAAVYDLTQKNVSVSSFVNGVSITSQTGEVKVK CCCCCCCCCCEEEEEEEECCCCCCEEEHHHHHHHHHCCCCHHHHHCCEEEECCCCCEEEE GLELEAVSDVTDNLKVIAAYTLAKSEVQNGADKGNRLQLMPNQQASLWADYSWHSGVLDG EEEEEEHHCCCCCEEEEEEEHHHHHHHHCCCCCCCEEEECCCCCCCEEECCCCCCCCCCC FGIGAGARYTGNTYGDKANTWLGKADAYTVFDAAVHYDLGRLDNSLKGASLALNATNLLD CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHCCCCCCCEEEEEHHHHHC KDYISTCDSFYCYYGDQRSVVASATYKW HHHHHHCCCEEEEECCCCCEEEEEECCC >Mature Secondary Structure SRSLDTLLRPSLLAVAIALCTPLASSQLIAAEQASSVRAYNLPAAPLSTTLNQIASQGG CCCHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHCCCEEEECCCCCHHHHHHHHHHHCCC LTLSLNPSLAAGKTSAPVNGQYDAAGALRAALRGTGLQLEQSGAGTYTLVAVPEGVMALP EEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCEEEEEECCCCCEECC ETSVIGVENYESAWGPVEGYTATRTAAGTKTDTALVEAPRSISVATRQQMEDRGVHSLDD CCEEEECCCCCCCCCCCCCCEEECCCCCCCCCHHHHHCCCCCHHHHHHHHHHCCCHHHHH AVRYMPGITASSYGSDTRADWLRVRGFEPTQFLDGLPLPKGVYANPKQETWNLDRLALLR HHHHCCCCCCCCCCCCCCCCCEEECCCCHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEC GPASSVYGQTPPGGLLDMVSRRPSDVQSNEIQLQYGSDNHRQINFASTGKIDDAGQFLYG CCHHHCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCHHHHHHH LSGVVRDSGTQIDHVDNKRYNIAPSLTWNIDDDTRFTLLTQFTRDDTGITSQFLPVQGTK HHHHCCCCCCEEECCCCCCEEECCEEEEECCCCCEEEEEEEECCCCCCCCCEEEECCCCE IDMPFGKVSHHKNLGDPDWEYYDRTYYALGYAFEHRLNDVWQFKQNLRYTKSDLSFQGIT EECCCCHHHCCCCCCCCCHHHHCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE VGSYPFTQVDNDGNVGRTTTIVDEDISQFAVDNNFQADFATGDIRHTLLLGLDHQRSNTN ECCCCCEEECCCCCCCCEEEEEHHHHHHHHCCCCCCCEECCCCCEEEEEEECCCCCCCCC YTSIFGSAPEINVNNPIHGQPIVRPARSTAFYDYNQKTYQTGLYVQDQMALDQWRLTLGG EEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEECCCEEEHHHHHHHEEEEECC REDWVHTSTQFINKGDATNTQRDKAFSGNAAISYVFDSGFVPYLSYAESFQPTTGADASS CCCCEECHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCCC TESLKPTEGKQWELGIKYQPPGSKTLLTAAVYDLTQKNVSVSSFVNGVSITSQTGEVKVK CCCCCCCCCCEEEEEEEECCCCCCEEEHHHHHHHHHCCCCHHHHHCCEEEECCCCCEEEE GLELEAVSDVTDNLKVIAAYTLAKSEVQNGADKGNRLQLMPNQQASLWADYSWHSGVLDG EEEEEEHHCCCCCEEEEEEEHHHHHHHHCCCCCCCEEEECCCCCCCEEECCCCCCCCCCC FGIGAGARYTGNTYGDKANTWLGKADAYTVFDAAVHYDLGRLDNSLKGASLALNATNLLD CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHCCCCCCCEEEEEHHHHHC KDYISTCDSFYCYYGDQRSVVASATYKW HHHHHHCCCEEEEECCCCCEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8576065 [H]