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The map label for this gene is fecI [H]

Identifier: 77461408

GI number: 77461408

Start: 5834897

End: 5835415

Strand: Direct

Name: fecI [H]

Synonym: Pfl01_5187

Alternate gene names: 77461408

Gene position: 5834897-5835415 (Clockwise)

Preceding gene: 77461407

Following gene: 77461409

Centisome position: 90.63

GC content: 63.97

Gene sequence:

>519_bases
GTGTCTTCAGCCCAAAGCCCTCACAGTGAGCTCGTCGGTGCGTTGTATCGCGACCACCGTGGCTGGCTGCTGGCCTGGCT
GCGGCGTAACGTGGCTTGCCCGCAACGGGCCGAAGACCTGAGCCAGGACACTTTCGTCCGCCTGCTCGGCCGCGACGAAC
TGCTGACACCGCGCGAACCCCGGGCATTTCTGGTGGCGATCGCCAAAGGGTTGTTGTTCGACTACTTCCGCCGGGCGGCG
CTGGAACAGGCGTATCTGACCGAACTGATGCTGATCCCCGAGGGCGAGCAGCCCTCGGTCGAAGAACAGCAACTGATACT
AGAAGACCTCAAGGCCATCGACCGCATGCTCGACAAGCTGTCGACCAAGGCCCGCGCCGCTTTCCTCTATAACCGCCTCG
ACGGCCTGACCCACGCCGAAATCGCCGACAAACTCGGCGTGTCGGTCCCCCGCGTGCGTCAGTACCTGGCCCAGGGCATC
CGCCAGTGCTACATCGCGCTGTACGGTGAGCCGACATGA

Upstream 100 bases:

>100_bases
TCGCCCGACAACCCGACCGGTGGCCAATTGCTAACCATTCCCACCTCTGCCACAATCGCGAACAATTCTCGTTAGTTAAC
ACTTCCCAGTCGGTGTCGTC

Downstream 100 bases:

>100_bases
GCCCGGCCAGTTCTAGACCGGTCCCGGCCCATGTGCTGGACGCGGCGATTGCCTGGCAATTGACCCTCGATTCCAGCACG
CCGCTGGAGCGCGAAGAGTT

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 171

Protein sequence:

>172_residues
MSSAQSPHSELVGALYRDHRGWLLAWLRRNVACPQRAEDLSQDTFVRLLGRDELLTPREPRAFLVAIAKGLLFDYFRRAA
LEQAYLTELMLIPEGEQPSVEEQQLILEDLKAIDRMLDKLSTKARAAFLYNRLDGLTHAEIADKLGVSVPRVRQYLAQGI
RQCYIALYGEPT

Sequences:

>Translated_172_residues
MSSAQSPHSELVGALYRDHRGWLLAWLRRNVACPQRAEDLSQDTFVRLLGRDELLTPREPRAFLVAIAKGLLFDYFRRAA
LEQAYLTELMLIPEGEQPSVEEQQLILEDLKAIDRMLDKLSTKARAAFLYNRLDGLTHAEIADKLGVSVPRVRQYLAQGI
RQCYIALYGEPT
>Mature_171_residues
SSAQSPHSELVGALYRDHRGWLLAWLRRNVACPQRAEDLSQDTFVRLLGRDELLTPREPRAFLVAIAKGLLFDYFRRAAL
EQAYLTELMLIPEGEQPSVEEQQLILEDLKAIDRMLDKLSTKARAAFLYNRLDGLTHAEIADKLGVSVPRVRQYLAQGIR
QCYIALYGEPT

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates the fec genes for iron dicitrate transport (Probable) [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790746, Length=152, Percent_Identity=49.3421052631579, Blast_Score=155, Evalue=1e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19613; Mature: 19482

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSAQSPHSELVGALYRDHRGWLLAWLRRNVACPQRAEDLSQDTFVRLLGRDELLTPREP
CCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHCCHHHHHHHHCCCCCCCCCCC
RAFLVAIAKGLLFDYFRRAALEQAYLTELMLIPEGEQPSVEEQQLILEDLKAIDRMLDKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
STKARAAFLYNRLDGLTHAEIADKLGVSVPRVRQYLAQGIRQCYIALYGEPT
HHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SSAQSPHSELVGALYRDHRGWLLAWLRRNVACPQRAEDLSQDTFVRLLGRDELLTPREP
CCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHCCHHHHHHHHCCCCCCCCCCC
RAFLVAIAKGLLFDYFRRAALEQAYLTELMLIPEGEQPSVEEQQLILEDLKAIDRMLDKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
STKARAAFLYNRLDGLTHAEIADKLGVSVPRVRQYLAQGIRQCYIALYGEPT
HHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2254251; 7610040; 9278503; 8052622 [H]