BacMap

Definition	Pseudomonas fluorescens Pf0-1 chromosome, complete genome.
Accession	NC_007492
Length	6,438,405

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The map label for this gene is yqjQ [H]

Identifier: 77461327

GI number: 77461327

Start: 5740317

End: 5741105

Strand: Direct

Name: yqjQ [H]

Synonym: Pfl01_5106

Alternate gene names: 77461327

Gene position: 5740317-5741105 (Clockwise)

Preceding gene: 77461326

Following gene: 77461328

Centisome position: 89.16

GC content: 62.86

Gene sequence:

>789_bases
ATGACCCGTTACGCTCTGATCACCGGCGCCTCCAGCGGCATCGGCCTGGCCATGGCCGAAGCCCTGGCACGCCGTGGCCG
CAGCCTGATTCTGGTAGCTCGCCAGCGTGATCAGCTGGAAAGCATTGCGATTGAACTGACCCAGCGCTTCGGTGTGGAGG
TACTGTTCCGCGCCTGCGATCTCGGCGAGCCGCTGCGCCTGTCCGGTTTCCTGCTGGAGCTTGAAGAAGGCGACCGGCAG
ATCGATCTGCTGGTCAACTGTGCCGGCATCGGTACTTGCGGCCCGTTCCTGGCCCAGGACTGGATGACCGAACAGGACCT
GATCGAAGTGAACATCCTCGCCCTCACCCGGCTCTGCCATGCCATCGGCAACAGCATGGCGTTGCAGGGTGGCGGGCAGA
TTCTCAATGTCGCGTCGGTGGCGGCCTTCAACCCCGGGCCCTGGATGAGCACCTACTACGCCAGCAAGGCGTACGTGTTG
CACTTCTCGGAAGCACTGCGGGTGGAACTGAAGAAGTGTGCAGTCAAGGTGTCGGTGCTCTGCCCCGGCCCGACCCGCAC
CGCGTTCTTTCGCACCGCGCAACTGAACAACGACAAGCTCAACGCCAGCAAACTGTTGATGAGCCCCGAGGAGGTCGCGC
TGTATACCGTGCGCGCCCTGGAGAAAAACCGCGCGATCATCATTCCCGGACGCCGAAACCGCTGGTTCGCCTTTCTGCCT
CGGCTCGGTTCGCGCTGGCTCAATCGCACGATTGTCGGCATGGTCAACAAGGCTTACTGCCCGCGCTGA

Upstream 100 bases:

>100_bases
GAAGCTGCTCTCACCCCTGTAGACTCTGCGAAAGAATGAACAACGCTCCCCGCCGTGACACCTGCGTCCACGGCGCGGCG
CTGTTGCGATGGAGATTTGC

Downstream 100 bases:

>100_bases
AAAGCCCTACGGCAAAACACTGGGCGGGCTTATCCCCCTATGAGTACACTCAGGCCAGCCCAAACAACGGAGAAAACAGC
TGTGGATACTCTGTTCACCA

Product: Short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 261

Protein sequence:

>262_residues
MTRYALITGASSGIGLAMAEALARRGRSLILVARQRDQLESIAIELTQRFGVEVLFRACDLGEPLRLSGFLLELEEGDRQ
IDLLVNCAGIGTCGPFLAQDWMTEQDLIEVNILALTRLCHAIGNSMALQGGGQILNVASVAAFNPGPWMSTYYASKAYVL
HFSEALRVELKKCAVKVSVLCPGPTRTAFFRTAQLNNDKLNASKLLMSPEEVALYTVRALEKNRAIIIPGRRNRWFAFLP
RLGSRWLNRTIVGMVNKAYCPR

Sequences:

>Translated_262_residues
MTRYALITGASSGIGLAMAEALARRGRSLILVARQRDQLESIAIELTQRFGVEVLFRACDLGEPLRLSGFLLELEEGDRQ
IDLLVNCAGIGTCGPFLAQDWMTEQDLIEVNILALTRLCHAIGNSMALQGGGQILNVASVAAFNPGPWMSTYYASKAYVL
HFSEALRVELKKCAVKVSVLCPGPTRTAFFRTAQLNNDKLNASKLLMSPEEVALYTVRALEKNRAIIIPGRRNRWFAFLP
RLGSRWLNRTIVGMVNKAYCPR
>Mature_261_residues
TRYALITGASSGIGLAMAEALARRGRSLILVARQRDQLESIAIELTQRFGVEVLFRACDLGEPLRLSGFLLELEEGDRQI
DLLVNCAGIGTCGPFLAQDWMTEQDLIEVNILALTRLCHAIGNSMALQGGGQILNVASVAAFNPGPWMSTYYASKAYVLH
FSEALRVELKKCAVKVSVLCPGPTRTAFFRTAQLNNDKLNASKLLMSPEEVALYTVRALEKNRAIIIPGRRNRWFAFLPR
LGSRWLNRTIVGMVNKAYCPR

Specific function: Unknown

COG id: COG0300

COG function: function code R; Short-chain dehydrogenases of various substrate specificities

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI226371731, Length=224, Percent_Identity=31.25, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI4557649, Length=214, Percent_Identity=32.7102803738318, Blast_Score=91, Evalue=7e-19,
Organism=Homo sapiens, GI32483357, Length=209, Percent_Identity=28.7081339712919, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI7705855, Length=267, Percent_Identity=26.2172284644195, Blast_Score=88, Evalue=8e-18,
Organism=Homo sapiens, GI40254992, Length=204, Percent_Identity=29.4117647058824, Blast_Score=84, Evalue=9e-17,
Organism=Homo sapiens, GI109715829, Length=223, Percent_Identity=29.1479820627803, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI126723191, Length=185, Percent_Identity=30.2702702702703, Blast_Score=75, Evalue=8e-14,
Organism=Homo sapiens, GI4503817, Length=229, Percent_Identity=28.3842794759825, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI31542939, Length=198, Percent_Identity=27.7777777777778, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI126723750, Length=206, Percent_Identity=27.6699029126214, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI20149619, Length=187, Percent_Identity=28.3422459893048, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI5031737, Length=196, Percent_Identity=28.0612244897959, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI33667109, Length=195, Percent_Identity=27.6923076923077, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI7657478, Length=190, Percent_Identity=28.4210526315789, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI225579078, Length=217, Percent_Identity=25.8064516129032, Blast_Score=66, Evalue=4e-11,
Organism=Escherichia coli, GI87082100, Length=250, Percent_Identity=28.4, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787335, Length=200, Percent_Identity=30, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1787820, Length=217, Percent_Identity=27.1889400921659, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1786701, Length=232, Percent_Identity=29.3103448275862, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI87082160, Length=187, Percent_Identity=29.9465240641711, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1790717, Length=187, Percent_Identity=27.2727272727273, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789378, Length=202, Percent_Identity=27.2277227722772, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI1786812, Length=198, Percent_Identity=31.3131313131313, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1789208, Length=211, Percent_Identity=28.9099526066351, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787905, Length=193, Percent_Identity=28.4974093264249, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1788459, Length=188, Percent_Identity=28.1914893617021, Blast_Score=61, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI71994604, Length=191, Percent_Identity=32.4607329842932, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI71994600, Length=192, Percent_Identity=29.6875, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17561402, Length=222, Percent_Identity=29.7297297297297, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI25152911, Length=202, Percent_Identity=29.7029702970297, Blast_Score=69, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6323882, Length=195, Percent_Identity=33.8461538461538, Blast_Score=86, Evalue=4e-18,
Organism=Saccharomyces cerevisiae, GI6319635, Length=230, Percent_Identity=26.9565217391304, Blast_Score=70, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6322067, Length=181, Percent_Identity=31.4917127071823, Blast_Score=69, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6320089, Length=230, Percent_Identity=25.2173913043478, Blast_Score=65, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24640442, Length=188, Percent_Identity=32.4468085106383, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI161076933, Length=183, Percent_Identity=28.9617486338798, Blast_Score=88, Evalue=5e-18,
Organism=Drosophila melanogaster, GI24584748, Length=182, Percent_Identity=29.1208791208791, Blast_Score=88, Evalue=5e-18,
Organism=Drosophila melanogaster, GI24584744, Length=183, Percent_Identity=30.0546448087432, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI28574402, Length=183, Percent_Identity=30.0546448087432, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24580925, Length=194, Percent_Identity=32.9896907216495, Blast_Score=85, Evalue=5e-17,
Organism=Drosophila melanogaster, GI24584752, Length=181, Percent_Identity=32.0441988950276, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI21357041, Length=196, Percent_Identity=29.0816326530612, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI21358495, Length=190, Percent_Identity=30, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI21356301, Length=224, Percent_Identity=28.125, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI116007236, Length=189, Percent_Identity=28.042328042328, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI17737361, Length=191, Percent_Identity=30.8900523560209, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI28571526, Length=196, Percent_Identity=27.5510204081633, Blast_Score=71, Evalue=9e-13,
Organism=Drosophila melanogaster, GI116007238, Length=185, Percent_Identity=28.1081081081081, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24641388, Length=205, Percent_Identity=27.8048780487805, Blast_Score=66, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 28974; Mature: 28843

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRYALITGASSGIGLAMAEALARRGRSLILVARQRDQLESIAIELTQRFGVEVLFRACD
CCEEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHC
LGEPLRLSGFLLELEEGDRQIDLLVNCAGIGTCGPFLAQDWMTEQDLIEVNILALTRLCH
CCCCCEECEEEEEECCCCCEEEEEEEECCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHH
AIGNSMALQGGGQILNVASVAAFNPGPWMSTYYASKAYVLHFSEALRVELKKCAVKVSVL
HHCCCEEECCCCCEEEEEEEEECCCCCCCHHHHCCEEEEEEEHHHHHHHHHHHEEEEEEE
CPGPTRTAFFRTAQLNNDKLNASKLLMSPEEVALYTVRALEKNRAIIIPGRRNRWFAFLP
ECCCCCHHEEEEEECCCCCCCHHHHCCCCHHHHHEEEEECCCCCEEEEECCCCCCEEEHH
RLGSRWLNRTIVGMVNKAYCPR
HHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TRYALITGASSGIGLAMAEALARRGRSLILVARQRDQLESIAIELTQRFGVEVLFRACD
CEEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHC
LGEPLRLSGFLLELEEGDRQIDLLVNCAGIGTCGPFLAQDWMTEQDLIEVNILALTRLCH
CCCCCEECEEEEEECCCCCEEEEEEEECCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHH
AIGNSMALQGGGQILNVASVAAFNPGPWMSTYYASKAYVLHFSEALRVELKKCAVKVSVL
HHCCCEEECCCCCEEEEEEEEECCCCCCCHHHHCCEEEEEEEHHHHHHHHHHHEEEEEEE
CPGPTRTAFFRTAQLNNDKLNASKLLMSPEEVALYTVRALEKNRAIIIPGRRNRWFAFLP
ECCCCCHHEEEEEECCCCCCCHHHHCCCCHHHHHEEEEECCCCCEEEEECCCCCCEEEHH
RLGSRWLNRTIVGMVNKAYCPR
HHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]