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The map label for this gene is yebA [H]

Identifier: 77461320

GI number: 77461320

Start: 5733436

End: 5734947

Strand: Direct

Name: yebA [H]

Synonym: Pfl01_5099

Alternate gene names: 77461320

Gene position: 5733436-5734947 (Clockwise)

Preceding gene: 77461318

Following gene: 77461321

Centisome position: 89.05

GC content: 56.81

Gene sequence:

>1512_bases
ATGATTTGGTTATATTTTATACAGTTATTTCATCTTCATCATGTCATTAATCTTTTCCAATTCATCTTTTTCAAAGTCAA
ATTACTTATGACCACTGAACCGTCTAAAGCGCCACCGCTTTACCCGAAGACCCACCTGCTCGCCGCAAGTGGGATCGCCG
CCCTTCTCAGTCTGGCGCTCCTGGTGTTTCCATCCAGTGATGTTGAAGCCAAAAAGACAACGCTGAGCCTTGAACTGGAA
AGTCCTGCTGAACAACTGACACAAGATCAAGACGCTGCCGACGCAGCTCAAGCCACAAACGAATCCGTAGCCTCTCCTTT
CGCGCAGATCGAAAACAGCACCGAAGAGACGCAGGAAACCGCTCAGGCCGCACCGGCGCCGATACCGGTAGTCGAAGAAA
AGAAGGCCCCGAATCACAGGGAAGTGATCGTCTCCAAGGGCGATACGCTTTCTACACTGTTCGAGAAAGTCGGCCTGCCG
GCCGCGGCCGTCCATGAAGTGCTGGCCAGCGATAAACAGGCCAAGCAATTCAGCCAGCTCAAACATGGCCAGAAACTCGA
ATTCGAATTGAACCCACAAGGCCAGCTGACCAACCTGCACAGCAAGGTCAGCGACGTTGAAACCATCACCCTGACCAAGA
ACGACAAGGGTTATGTGTTCAACCGCGTTACCGCCAAACCGACTGTTCGCACCGCCTATGTACACGGCGTGATCAACAGC
TCGCTGTCGCAGTCCGCCGCCCGCGCAGGCCTGTCCCACAGCCTGACCATGGACATGGCCAGTGTCTTTGGCTACGACGT
CGACTTCGCCCAGGATATCCGCCAGGGCGACGAATTCGATGTGATCTACGAACAGAAAGTGGTGAATGGCAAAGCGGTTG
GCAACGGCCCGATCCTGTCAGCCCGCTTCACCAACCGCGGCAAGACTTACACCGCCGTGCGTTACACCAACAAACAGGGC
AACAGCAGCTACTACACTGCTGATGGCAACAGCATGCGCAAGGCGTTCATCCGTACACCGGTGGACTTCGCCCGCATCAG
CTCGAAATTCTCCATGGGCCGCAAACACCCGATCCTCAACAAGATCCGCGCCCACAAAGGCGTCGATTACGCCGCCCCAC
GTGGCACGCCGATCAAGGCTGCCGGCGACGGCAAAGTGCTGTTGGCCGGCCGTCGCGGCGGTTACGGCAACACCGTGATC
ATCCAGCACGGCAACACTTACCGCACGCTGTATGGCCACATGCAGGGCTTCGCCAAGGGCGTGAAGACTGGCGGCACCGT
CAAACAAGGCCAGGTGATCGGTTACATCGGCACCACCGGCCTGTCCACCGGCCCGCACCTGCACTATGAATTCCAGGTCA
ACGGCGTTCACGTCGATCCATTGGGGCAGAAGCTGCCGATGGCCGACCCGATCGCCAAATCCGAACGCGCTCGCTTCCTG
GCGCAGAGCCAGCCGTTGATGGCGCGCATGGATCAGGAAAAAGCCACCATGCTGGCTTCGAGCAAACGTTAA

Upstream 100 bases:

>100_bases
CAAAGGGAACCAACCATACAAGATCGCGCACCAAATACAAGGTTTGCCCGGCGCACGGACGCCAATCCACGGACAGAGCG
CCCGCAGACTTGCTTCAGAG

Downstream 100 bases:

>100_bases
GCCATGGCTCTGTATATCGGCGTGATGTCCGGCACCAGTCTCGACGGGCTGGACATCGCCCTGATCGAGCAGTCCTCGGC
GATCAATCTGGTCGCCACGC

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 503; Mature: 503

Protein sequence:

>503_residues
MIWLYFIQLFHLHHVINLFQFIFFKVKLLMTTEPSKAPPLYPKTHLLAASGIAALLSLALLVFPSSDVEAKKTTLSLELE
SPAEQLTQDQDAADAAQATNESVASPFAQIENSTEETQETAQAAPAPIPVVEEKKAPNHREVIVSKGDTLSTLFEKVGLP
AAAVHEVLASDKQAKQFSQLKHGQKLEFELNPQGQLTNLHSKVSDVETITLTKNDKGYVFNRVTAKPTVRTAYVHGVINS
SLSQSAARAGLSHSLTMDMASVFGYDVDFAQDIRQGDEFDVIYEQKVVNGKAVGNGPILSARFTNRGKTYTAVRYTNKQG
NSSYYTADGNSMRKAFIRTPVDFARISSKFSMGRKHPILNKIRAHKGVDYAAPRGTPIKAAGDGKVLLAGRRGGYGNTVI
IQHGNTYRTLYGHMQGFAKGVKTGGTVKQGQVIGYIGTTGLSTGPHLHYEFQVNGVHVDPLGQKLPMADPIAKSERARFL
AQSQPLMARMDQEKATMLASSKR

Sequences:

>Translated_503_residues
MIWLYFIQLFHLHHVINLFQFIFFKVKLLMTTEPSKAPPLYPKTHLLAASGIAALLSLALLVFPSSDVEAKKTTLSLELE
SPAEQLTQDQDAADAAQATNESVASPFAQIENSTEETQETAQAAPAPIPVVEEKKAPNHREVIVSKGDTLSTLFEKVGLP
AAAVHEVLASDKQAKQFSQLKHGQKLEFELNPQGQLTNLHSKVSDVETITLTKNDKGYVFNRVTAKPTVRTAYVHGVINS
SLSQSAARAGLSHSLTMDMASVFGYDVDFAQDIRQGDEFDVIYEQKVVNGKAVGNGPILSARFTNRGKTYTAVRYTNKQG
NSSYYTADGNSMRKAFIRTPVDFARISSKFSMGRKHPILNKIRAHKGVDYAAPRGTPIKAAGDGKVLLAGRRGGYGNTVI
IQHGNTYRTLYGHMQGFAKGVKTGGTVKQGQVIGYIGTTGLSTGPHLHYEFQVNGVHVDPLGQKLPMADPIAKSERARFL
AQSQPLMARMDQEKATMLASSKR
>Mature_503_residues
MIWLYFIQLFHLHHVINLFQFIFFKVKLLMTTEPSKAPPLYPKTHLLAASGIAALLSLALLVFPSSDVEAKKTTLSLELE
SPAEQLTQDQDAADAAQATNESVASPFAQIENSTEETQETAQAAPAPIPVVEEKKAPNHREVIVSKGDTLSTLFEKVGLP
AAAVHEVLASDKQAKQFSQLKHGQKLEFELNPQGQLTNLHSKVSDVETITLTKNDKGYVFNRVTAKPTVRTAYVHGVINS
SLSQSAARAGLSHSLTMDMASVFGYDVDFAQDIRQGDEFDVIYEQKVVNGKAVGNGPILSARFTNRGKTYTAVRYTNKQG
NSSYYTADGNSMRKAFIRTPVDFARISSKFSMGRKHPILNKIRAHKGVDYAAPRGTPIKAAGDGKVLLAGRRGGYGNTVI
IQHGNTYRTLYGHMQGFAKGVKTGGTVKQGQVIGYIGTTGLSTGPHLHYEFQVNGVHVDPLGQKLPMADPIAKSERARFL
AQSQPLMARMDQEKATMLASSKR

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=352, Percent_Identity=34.0909090909091, Blast_Score=200, Evalue=2e-52,
Organism=Escherichia coli, GI87082174, Length=99, Percent_Identity=41.4141414141414, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI87082297, Length=95, Percent_Identity=37.8947368421053, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1789099, Length=99, Percent_Identity=39.3939393939394, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 54912; Mature: 54912

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIWLYFIQLFHLHHVINLFQFIFFKVKLLMTTEPSKAPPLYPKTHLLAASGIAALLSLAL
CHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
LVFPSSDVEAKKTTLSLELESPAEQLTQDQDAADAAQATNESVASPFAQIENSTEETQET
HHCCCCCCCCCEEEEEEEECCHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCHHHHHHH
AQAAPAPIPVVEEKKAPNHREVIVSKGDTLSTLFEKVGLPAAAVHEVLASDKQAKQFSQL
HHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHH
KHGQKLEFELNPQGQLTNLHSKVSDVETITLTKNDKGYVFNRVTAKPTVRTAYVHGVINS
HCCCEEEEEECCCCCHHHHHHHHCCCEEEEEEECCCCEEEEEEECCCCEEHHHHHHHHHH
SLSQSAARAGLSHSLTMDMASVFGYDVDFAQDIRQGDEFDVIYEQKVVNGKAVGNGPILS
HHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEEEEEECCCCCCCCCCEEE
ARFTNRGKTYTAVRYTNKQGNSSYYTADGNSMRKAFIRTPVDFARISSKFSMGRKHPILN
EEECCCCCEEEEEEEECCCCCCCEEECCCCHHHHHHHCCCHHHHHHHHHHHCCCCCHHHH
KIRAHKGVDYAAPRGTPIKAAGDGKVLLAGRRGGYGNTVIIQHGNTYRTLYGHMQGFAKG
HHHHHCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHH
VKTGGTVKQGQVIGYIGTTGLSTGPHLHYEFQVNGVHVDPLGQKLPMADPIAKSERARFL
HCCCCCEECCEEEEEEECCCCCCCCEEEEEEEECCEEECCCCCCCCCCCCCHHHHHHHHH
AQSQPLMARMDQEKATMLASSKR
HCCCCHHHHHCHHHHHHHHCCCC
>Mature Secondary Structure
MIWLYFIQLFHLHHVINLFQFIFFKVKLLMTTEPSKAPPLYPKTHLLAASGIAALLSLAL
CHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
LVFPSSDVEAKKTTLSLELESPAEQLTQDQDAADAAQATNESVASPFAQIENSTEETQET
HHCCCCCCCCCEEEEEEEECCHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCHHHHHHH
AQAAPAPIPVVEEKKAPNHREVIVSKGDTLSTLFEKVGLPAAAVHEVLASDKQAKQFSQL
HHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHH
KHGQKLEFELNPQGQLTNLHSKVSDVETITLTKNDKGYVFNRVTAKPTVRTAYVHGVINS
HCCCEEEEEECCCCCHHHHHHHHCCCEEEEEEECCCCEEEEEEECCCCEEHHHHHHHHHH
SLSQSAARAGLSHSLTMDMASVFGYDVDFAQDIRQGDEFDVIYEQKVVNGKAVGNGPILS
HHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEEEEEECCCCCCCCCCEEE
ARFTNRGKTYTAVRYTNKQGNSSYYTADGNSMRKAFIRTPVDFARISSKFSMGRKHPILN
EEECCCCCEEEEEEEECCCCCCCEEECCCCHHHHHHHCCCHHHHHHHHHHHCCCCCHHHH
KIRAHKGVDYAAPRGTPIKAAGDGKVLLAGRRGGYGNTVIIQHGNTYRTLYGHMQGFAKG
HHHHHCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHH
VKTGGTVKQGQVIGYIGTTGLSTGPHLHYEFQVNGVHVDPLGQKLPMADPIAKSERARFL
HCCCCCEECCEEEEEEECCCCCCCCEEEEEEEECCEEECCCCCCCCCCCCCHHHHHHHHH
AQSQPLMARMDQEKATMLASSKR
HCCCCHHHHHCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]