BacMap

Definition	Pseudomonas fluorescens Pf0-1 chromosome, complete genome.
Accession	NC_007492
Length	6,438,405

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The map label for this gene is yvrO [H]

Identifier: 77461247

GI number: 77461247

Start: 5658816

End: 5659526

Strand: Direct

Name: yvrO [H]

Synonym: Pfl01_5026

Alternate gene names: 77461247

Gene position: 5658816-5659526 (Clockwise)

Preceding gene: 77461246

Following gene: 77461248

Centisome position: 87.89

GC content: 65.12

Gene sequence:

>711_bases
ATGACCCAAGCACTCATCGAACTGTCCGACCTGGGCTTCAACTGGCCCGGTCACCCGCCGTTGCTGGACATCCCGGCGTT
TCGTCTGGAAGCCGGCGAAACCCTGTTCCTCAAGGGCCCCAGCGGCAGCGGCAAGACCACCCTGCTCGGCCTGCTGGGCG
GGGTGCAGAAACCCGGCCGCGGCAGCATTCGCCTGCTCGGCCAGGAACTGACCGACCTGGGTGCAGGCGCCCGTGATCGC
TTTCGGGTCGATCACACCGGTTACATTTTCCAGCAGTTCAACCTGCTGCCGTTTCTCTCGGTGCGCGAGAACGTCGAGCT
GCCGTGCCACTTTTCGAAGCTGCGGGCCGAGCGTGCGAAACAGCGCCACGGCAGCGTCGATCAGGCTGCTGCCACCCTGC
TCGCCCACCTGGGTTTGAAGGACGAAAGCATCCTGAGTCGCCGCGCCGATTCGCTGTCGATCGGTCAGCAACAGCGGGTC
GCCGCTGCCCGTGCGTTGATCGGTCAGCCAGAACTGGTGATCGCCGACGAACCGACCTCGGCACTGGATTACGACGCCCG
GGAAAACTTCATTCGCCTGCTGTTCGCCGAGTGCCGTGAGGCCGGCTCGAGCCTGTTGTTCGTCAGCCACGACCAGAGCC
TGGCGCCGCTGTTCGACCGTCACCTGTCCCTGGCCGAACTCAATCGCGCCGCCACGTCTGCCGAGGTCTGA

Upstream 100 bases:

>100_bases
CCCAGAAAATTCAGGTACAACTGATCGGCCCGAGCGGCCAGCAAGGCACGGAAGTGACGGCCAAGGCCGCCGCCCTGAAG
TTCTGACACGAAACGGCGCC

Downstream 100 bases:

>100_bases
GATGTATCTGTTCCGTCTGGCCATGGCCAGCCTCGCCAACCGGCGTTTCACTGCCCTGCTTACCGCATTCGCCATCGCCC
TCTCCGTCTGCCTGCTGCTG

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MTQALIELSDLGFNWPGHPPLLDIPAFRLEAGETLFLKGPSGSGKTTLLGLLGGVQKPGRGSIRLLGQELTDLGAGARDR
FRVDHTGYIFQQFNLLPFLSVRENVELPCHFSKLRAERAKQRHGSVDQAAATLLAHLGLKDESILSRRADSLSIGQQQRV
AAARALIGQPELVIADEPTSALDYDARENFIRLLFAECREAGSSLLFVSHDQSLAPLFDRHLSLAELNRAATSAEV

Sequences:

>Translated_236_residues
MTQALIELSDLGFNWPGHPPLLDIPAFRLEAGETLFLKGPSGSGKTTLLGLLGGVQKPGRGSIRLLGQELTDLGAGARDR
FRVDHTGYIFQQFNLLPFLSVRENVELPCHFSKLRAERAKQRHGSVDQAAATLLAHLGLKDESILSRRADSLSIGQQQRV
AAARALIGQPELVIADEPTSALDYDARENFIRLLFAECREAGSSLLFVSHDQSLAPLFDRHLSLAELNRAATSAEV
>Mature_235_residues
TQALIELSDLGFNWPGHPPLLDIPAFRLEAGETLFLKGPSGSGKTTLLGLLGGVQKPGRGSIRLLGQELTDLGAGARDRF
RVDHTGYIFQQFNLLPFLSVRENVELPCHFSKLRAERAKQRHGSVDQAAATLLAHLGLKDESILSRRADSLSIGQQQRVA
AARALIGQPELVIADEPTSALDYDARENFIRLLFAECREAGSSLLFVSHDQSLAPLFDRHLSLAELNRAATSAEV

Specific function: Unknown

COG id: COG1136

COG function: function code V; ABC-type antimicrobial peptide transport system, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI46592964, Length=231, Percent_Identity=31.1688311688312, Blast_Score=78, Evalue=6e-15,
Organism=Homo sapiens, GI46592915, Length=231, Percent_Identity=31.1688311688312, Blast_Score=78, Evalue=6e-15,
Organism=Homo sapiens, GI46592956, Length=231, Percent_Identity=31.1688311688312, Blast_Score=78, Evalue=6e-15,
Organism=Homo sapiens, GI46592898, Length=231, Percent_Identity=31.1688311688312, Blast_Score=78, Evalue=6e-15,
Organism=Homo sapiens, GI46592971, Length=231, Percent_Identity=31.1688311688312, Blast_Score=78, Evalue=6e-15,
Organism=Homo sapiens, GI46592978, Length=231, Percent_Identity=31.1688311688312, Blast_Score=78, Evalue=7e-15,
Organism=Homo sapiens, GI11967969, Length=217, Percent_Identity=31.7972350230415, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI255708477, Length=213, Percent_Identity=26.2910798122066, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI42741659, Length=219, Percent_Identity=28.7671232876712, Blast_Score=74, Evalue=9e-14,
Organism=Homo sapiens, GI4505771, Length=211, Percent_Identity=29.3838862559242, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI9961252, Length=211, Percent_Identity=29.3838862559242, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI27436953, Length=201, Percent_Identity=27.363184079602, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI156105685, Length=210, Percent_Identity=30, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI9961250, Length=213, Percent_Identity=26.7605633802817, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI171184400, Length=217, Percent_Identity=29.0322580645161, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI9665248, Length=224, Percent_Identity=27.6785714285714, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI150417984, Length=191, Percent_Identity=31.9371727748691, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI21536378, Length=214, Percent_Identity=26.6355140186916, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI153792144, Length=169, Percent_Identity=29.585798816568, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI27477115, Length=168, Percent_Identity=30.3571428571429, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI6005701, Length=185, Percent_Identity=27.5675675675676, Blast_Score=67, Evalue=1e-11,
Organism=Escherichia coli, GI1786703, Length=195, Percent_Identity=44.1025641025641, Blast_Score=134, Evalue=5e-33,
Organism=Escherichia coli, GI1787105, Length=223, Percent_Identity=34.5291479820628, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI87081834, Length=199, Percent_Identity=36.1809045226131, Blast_Score=117, Evalue=6e-28,
Organism=Escherichia coli, GI1787089, Length=214, Percent_Identity=35.5140186915888, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1786563, Length=208, Percent_Identity=35.5769230769231, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1787370, Length=196, Percent_Identity=35.7142857142857, Blast_Score=101, Evalue=3e-23,
Organism=Escherichia coli, GI1790544, Length=196, Percent_Identity=38.265306122449, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1789891, Length=211, Percent_Identity=36.4928909952607, Blast_Score=97, Evalue=8e-22,
Organism=Escherichia coli, GI1787029, Length=184, Percent_Identity=35.3260869565217, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI1789873, Length=192, Percent_Identity=34.375, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1786398, Length=194, Percent_Identity=34.020618556701, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787712, Length=194, Percent_Identity=33.5051546391753, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787500, Length=235, Percent_Identity=32.3404255319149, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1788225, Length=220, Percent_Identity=37.2727272727273, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI87081709, Length=216, Percent_Identity=34.2592592592593, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1788761, Length=208, Percent_Identity=34.1346153846154, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1789962, Length=227, Percent_Identity=33.0396475770925, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1790467, Length=204, Percent_Identity=31.3725490196078, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI1789672, Length=214, Percent_Identity=30.8411214953271, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1786253, Length=187, Percent_Identity=32.620320855615, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1786872, Length=212, Percent_Identity=33.9622641509434, Blast_Score=88, Evalue=4e-19,
Organism=Escherichia coli, GI87082267, Length=207, Percent_Identity=30.9178743961353, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1788644, Length=233, Percent_Identity=32.618025751073, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI87081791, Length=212, Percent_Identity=31.1320754716981, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1788210, Length=206, Percent_Identity=32.0388349514563, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1790190, Length=213, Percent_Identity=30.5164319248826, Blast_Score=84, Evalue=6e-18,
Organism=Escherichia coli, GI87081782, Length=194, Percent_Identity=30.9278350515464, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI48995001, Length=211, Percent_Identity=31.2796208530806, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787759, Length=226, Percent_Identity=28.7610619469027, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1787758, Length=236, Percent_Identity=29.6610169491525, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1788506, Length=190, Percent_Identity=37.3684210526316, Blast_Score=80, Evalue=9e-17,
Organism=Escherichia coli, GI1789032, Length=183, Percent_Identity=30.0546448087432, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1789864, Length=226, Percent_Identity=30.9734513274336, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1786319, Length=226, Percent_Identity=27.4336283185841, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI48994943, Length=195, Percent_Identity=31.2820512820513, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788450, Length=200, Percent_Identity=31.5, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI48994883, Length=190, Percent_Identity=31.0526315789474, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1786698, Length=220, Percent_Identity=27.7272727272727, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI145693107, Length=195, Percent_Identity=37.4358974358974, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1790525, Length=196, Percent_Identity=26.0204081632653, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787164, Length=202, Percent_Identity=35.1485148514851, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI48994997, Length=231, Percent_Identity=28.5714285714286, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1789963, Length=204, Percent_Identity=30.3921568627451, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788053, Length=205, Percent_Identity=31.219512195122, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1786345, Length=240, Percent_Identity=31.25, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1790534, Length=199, Percent_Identity=30.6532663316583, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1788897, Length=208, Percent_Identity=26.9230769230769, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1786975, Length=209, Percent_Identity=31.1004784688995, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1789991, Length=212, Percent_Identity=30.6603773584906, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786981, Length=172, Percent_Identity=36.046511627907, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787548, Length=206, Percent_Identity=30.0970873786408, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787547, Length=188, Percent_Identity=28.7234042553192, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788165, Length=212, Percent_Identity=28.3018867924528, Blast_Score=65, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17533971, Length=220, Percent_Identity=30, Blast_Score=84, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI71992290, Length=226, Percent_Identity=29.2035398230088, Blast_Score=80, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI115534520, Length=184, Percent_Identity=32.0652173913043, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI193208177, Length=212, Percent_Identity=28.3018867924528, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17567265, Length=204, Percent_Identity=29.4117647058824, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI212646699, Length=216, Percent_Identity=28.7037037037037, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI115533592, Length=207, Percent_Identity=28.9855072463768, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI115533608, Length=197, Percent_Identity=29.4416243654822, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17558664, Length=196, Percent_Identity=29.5918367346939, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI193209708, Length=185, Percent_Identity=30.2702702702703, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI71996809, Length=216, Percent_Identity=30.0925925925926, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI193211015, Length=216, Percent_Identity=30.0925925925926, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI193211017, Length=216, Percent_Identity=30.0925925925926, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17567269, Length=211, Percent_Identity=29.8578199052133, Blast_Score=70, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17541710, Length=206, Percent_Identity=31.0679611650485, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17569143, Length=218, Percent_Identity=28.8990825688073, Blast_Score=66, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6324985, Length=219, Percent_Identity=29.2237442922374, Blast_Score=77, Evalue=3e-15,
Organism=Drosophila melanogaster, GI85726357, Length=217, Percent_Identity=30.8755760368664, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI24641565, Length=187, Percent_Identity=33.6898395721925, Blast_Score=74, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24659289, Length=218, Percent_Identity=29.8165137614679, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI17136662, Length=210, Percent_Identity=29.0476190476191, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24666092, Length=185, Percent_Identity=31.8918918918919, Blast_Score=71, Evalue=5e-13,
Organism=Drosophila melanogaster, GI221512771, Length=202, Percent_Identity=28.2178217821782, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI85816269, Length=202, Percent_Identity=30.6930693069307, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24580553, Length=202, Percent_Identity=30.6930693069307, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI85724864, Length=202, Percent_Identity=30.6930693069307, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24580555, Length=202, Percent_Identity=30.6930693069307, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI28574744, Length=200, Percent_Identity=29.5, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI28574533, Length=210, Percent_Identity=30.4761904761905, Blast_Score=64, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 25731; Mature: 25599

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQALIELSDLGFNWPGHPPLLDIPAFRLEAGETLFLKGPSGSGKTTLLGLLGGVQKPGR
CCCHHEEHHHCCCCCCCCCCEECCCCEEECCCCEEEEECCCCCCCHHHHHHHHCCCCCCC
GSIRLLGQELTDLGAGARDRFRVDHTGYIFQQFNLLPFLSVRENVELPCHFSKLRAERAK
CCEEEHHHHHHHHCCCCCCCEEECCCHHHHHHCCCCCEEHHCCCCCCCCHHHHHHHHHHH
QRHGSVDQAAATLLAHLGLKDESILSRRADSLSIGQQQRVAAARALIGQPELVIADEPTS
HHCCCHHHHHHHHHHHCCCCCHHHHHHCCCHHCCCHHHHHHHHHHHCCCCCEEEECCCCC
ALDYDARENFIRLLFAECREAGSSLLFVSHDQSLAPLFDRHLSLAELNRAATSAEV
CCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCHHHHHHHHHCCCC
>Mature Secondary Structure 
TQALIELSDLGFNWPGHPPLLDIPAFRLEAGETLFLKGPSGSGKTTLLGLLGGVQKPGR
CCHHEEHHHCCCCCCCCCCEECCCCEEECCCCEEEEECCCCCCCHHHHHHHHCCCCCCC
GSIRLLGQELTDLGAGARDRFRVDHTGYIFQQFNLLPFLSVRENVELPCHFSKLRAERAK
CCEEEHHHHHHHHCCCCCCCEEECCCHHHHHHCCCCCEEHHCCCCCCCCHHHHHHHHHHH
QRHGSVDQAAATLLAHLGLKDESILSRRADSLSIGQQQRVAAARALIGQPELVIADEPTS
HHCCCHHHHHHHHHHHCCCCCHHHHHHCCCHHCCCHHHHHHHHHHHCCCCCEEEECCCCC
ALDYDARENFIRLLFAECREAGSSLLFVSHDQSLAPLFDRHLSLAELNRAATSAEV
CCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]