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The map label for this gene is nusB [H]

Identifier: 77461236

GI number: 77461236

Start: 5651077

End: 5651577

Strand: Reverse

Name: nusB [H]

Synonym: Pfl01_5015

Alternate gene names: 77461236

Gene position: 5651577-5651077 (Counterclockwise)

Preceding gene: 77461237

Following gene: 77461235

Centisome position: 87.78

GC content: 59.88

Gene sequence:

>501_bases
GTGATTAGCGACGAAAGCGATCGTTTCAACCCGCGCGATCCGAAACCTGCGGATGCCGGCAAGCCATCGAAAAGCGCCAA
GCGTCGCGAAGCCCGTCAGCTCGCGACCCAGGCCCTGTATCAGTGGCACATGGCTCGGCAGTCGTTGAACGAGATCGAAG
CGCAGTTCCGGGTCGATAACGATTTCACCGATGTCGACGGTGCTTACTTCCGCGAAATCCTCCACGGGGTTCCGCAGTTC
AAGACCGAAATCGACAACGCGCTCACGCCTTGCCTGGACCTGGCGATCGAAGAGCTGGATCCGGTTGAACTGGCGGTTCT
GCGCCTGTCCACCTGGGAACTGCTCAAGCGCGTCGACGTGCCGTATCGCGTTGTGATCAACGAAGGTATCGAACTGGCCA
AGGTGTTCGGTTCGACCGACGGCCACAAGTTCGTCAACGGCGTGCTCGACAAGCTGGCTCCGCGCCTGCGTGAAGCTGAA
GTGAAGGCGTTCAAGCGCTGA

Upstream 100 bases:

>100_bases
AAGCCATCGAACGTTCCGGCACCAAGGCCGGCAACAAAGGTGCTGAAGCTGCCCTGTCCGCTCTGGAAATGGTCAGCCTG
CTGGCGCAGTTGGAGGCCAA

Downstream 100 bases:

>100_bases
TCGGCGCTTGAATACTTTTTCTCGGCCATGGGCGAGTTTGAGCTGATCCGCAATTTCTTTGCCGCCGCGCCTTGTGCGCA
GGGCGGCGAAGGCGTTGCAC

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB [H]

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MISDESDRFNPRDPKPADAGKPSKSAKRREARQLATQALYQWHMARQSLNEIEAQFRVDNDFTDVDGAYFREILHGVPQF
KTEIDNALTPCLDLAIEELDPVELAVLRLSTWELLKRVDVPYRVVINEGIELAKVFGSTDGHKFVNGVLDKLAPRLREAE
VKAFKR

Sequences:

>Translated_166_residues
MISDESDRFNPRDPKPADAGKPSKSAKRREARQLATQALYQWHMARQSLNEIEAQFRVDNDFTDVDGAYFREILHGVPQF
KTEIDNALTPCLDLAIEELDPVELAVLRLSTWELLKRVDVPYRVVINEGIELAKVFGSTDGHKFVNGVLDKLAPRLREAE
VKAFKR
>Mature_166_residues
MISDESDRFNPRDPKPADAGKPSKSAKRREARQLATQALYQWHMARQSLNEIEAQFRVDNDFTDVDGAYFREILHGVPQF
KTEIDNALTPCLDLAIEELDPVELAVLRLSTWELLKRVDVPYRVVINEGIELAKVFGSTDGHKFVNGVLDKLAPRLREAE
VKAFKR

Specific function: Involved in the transcription termination process [H]

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family [H]

Homologues:

Organism=Escherichia coli, GI1786618, Length=125, Percent_Identity=52, Blast_Score=133, Evalue=6e-33,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011605
- InterPro:   IPR006027 [H]

Pfam domain/function: PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 18935; Mature: 18935

Theoretical pI: Translated: 5.78; Mature: 5.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISDESDRFNPRDPKPADAGKPSKSAKRREARQLATQALYQWHMARQSLNEIEAQFRVDN
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DFTDVDGAYFREILHGVPQFKTEIDNALTPCLDLAIEELDPVELAVLRLSTWELLKRVDV
CCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC
PYRVVINEGIELAKVFGSTDGHKFVNGVLDKLAPRLREAEVKAFKR
CCEEHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MISDESDRFNPRDPKPADAGKPSKSAKRREARQLATQALYQWHMARQSLNEIEAQFRVDN
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DFTDVDGAYFREILHGVPQFKTEIDNALTPCLDLAIEELDPVELAVLRLSTWELLKRVDV
CCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC
PYRVVINEGIELAKVFGSTDGHKFVNGVLDKLAPRLREAEVKAFKR
CCEEHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA