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The map label for this gene is xseB [H]

Identifier: 77461226

GI number: 77461226

Start: 5641715

End: 5641957

Strand: Direct

Name: xseB [H]

Synonym: Pfl01_5005

Alternate gene names: 77461226

Gene position: 5641715-5641957 (Clockwise)

Preceding gene: 77461225

Following gene: 77461227

Centisome position: 87.63

GC content: 62.14

Gene sequence:

>243_bases
ATGGCCCGCAAAAAAGCTGCACTGGATTTCGAACAGTCCCTCGCCGACCTGCAAACGCTGGTGGAGCGTCTGGAGAACGG
TGAATTGTCGCTGGAAGACTCGTTGACCGCTTTCGAGCAGGGCATCGGCCTGACCCGTGACTGCCAGGCGGCGCTGGCCC
AGGCCGAGCAGAAGGTCCAGGTGTTGCTGGAGCGCGATGGCGAACTCGCCGAGGAACCCTTCGACGCGGATCAGCCAGAA
TGA

Upstream 100 bases:

>100_bases
TCGACCGACTGACACCCTTGTCCGTCGGCCCGCTCATTTGCCCATACCCCCCCTATCTGCTAGTGTCGCGCCGGTTTAAC
GTCAACCGGAATTAGCCGCC

Downstream 100 bases:

>100_bases
TTGCAGCGTATTCGGCCACCAGCCAGGCACGGGTCAATGCGGCACTGGAAACCCTGTTCAACGCTCCGCTGCCAGAACTG
GCGCGCCTTTATGAAGCCAT

Product: exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit [H]

Number of amino acids: Translated: 80; Mature: 79

Protein sequence:

>80_residues
MARKKAALDFEQSLADLQTLVERLENGELSLEDSLTAFEQGIGLTRDCQAALAQAEQKVQVLLERDGELAEEPFDADQPE

Sequences:

>Translated_80_residues
MARKKAALDFEQSLADLQTLVERLENGELSLEDSLTAFEQGIGLTRDCQAALAQAEQKVQVLLERDGELAEEPFDADQPE
>Mature_79_residues
ARKKAALDFEQSLADLQTLVERLENGELSLEDSLTAFEQGIGLTRDCQAALAQAEQKVQVLLERDGELAEEPFDADQPE

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides [H]

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family [H]

Homologues:

Organism=Escherichia coli, GI1786624, Length=75, Percent_Identity=44, Blast_Score=65, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003761
- ProDom:   PD028235 [H]

Pfam domain/function: PF02609 Exonuc_VII_S [H]

EC number: =3.1.11.6 [H]

Molecular weight: Translated: 8848; Mature: 8717

Theoretical pI: Translated: 3.83; Mature: 3.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARKKAALDFEQSLADLQTLVERLENGELSLEDSLTAFEQGIGLTRDCQAALAQAEQKVQ
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
VLLERDGELAEEPFDADQPE
HHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ARKKAALDFEQSLADLQTLVERLENGELSLEDSLTAFEQGIGLTRDCQAALAQAEQKVQ
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
VLLERDGELAEEPFDADQPE
HHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA