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The map label for this gene is prtR [H]

Identifier: 77461218

GI number: 77461218

Start: 5628581

End: 5629321

Strand: Direct

Name: prtR [H]

Synonym: Pfl01_4997

Alternate gene names: 77461218

Gene position: 5628581-5629321 (Clockwise)

Preceding gene: 77461217

Following gene: 77461225

Centisome position: 87.42

GC content: 59.92

Gene sequence:

>741_bases
ATGAGAAAGAACACTAGCGGTCCAAGATTCAAGGCACTCCTGGAAGCTGCGAACATCACCACCACGGGATTCGCAAAGTT
CTGGGGCACGGAAGCCCAAAACGTTCATAACTGGTACACCCGGGGCGTACCCGCGTACCGCATGGAAGAAGTCGCGCGCC
TGCTGTCCGTCAACAGCCAATGGCTGAAGACCGGCGAAGGCCCGAAAGACGCCCCGCACCTGCATACGGAGTCGGGCGAC
ATCCTCGATGCCCATGCCATTCGCGGCGTCTACACGGTGCTAGAAACCAACGACATCGAATTGCCGCTCTACAAAGAAAC
CCCGGTCGCCCCCGGCTCCGACAAAACCCATGTCATAAAAGACCCGGAGCAAACCATCCGCCTGCCCCGCAGTCACCTCG
AAACACTGGAAATCCGCTACACCGACGCCATTTGCACCCACATGATCGGCAACAGCATGGCCGAGAAAATCGAAGACGGC
TCCACCCTCGCCATCGACCGCGGCCTCACCCAGGTGGTTGACGGCGAAATCTACGCCATTGAGCACGACGGCATGTTGCG
TATCAAATACCTGCACCGCATGCCCGGCAACGCCCTGCGCCTGCGCAGCCACAACAGCGCCGAATACCCGGACGAGATCT
TCCGGGCCTCACAGATCGAAGAGCAGAGGATTCATGTGTTGGGGTGGGTGTTCTGGTGGTCGACGCTGGGCAAGCGGCGG
CCGGTGGTGCCGTTTCTCTGA

Upstream 100 bases:

>100_bases
ATTTCCCACAAGCACGCCTTACATCCCGTCGCAAAATTTGCCCTTATTTTGAACGCAAGGTTTATTCAAACCGCTCTAGG
CCGGTCGTAGACTCGTGTTT

Downstream 100 bases:

>100_bases
TCCTCCATCACTCCCGGCCCCAGCACAGAACGTTGTAGGAGCGGGCTTGCCCGAGAAGAGGACCGGATACCCGGTACAAA
CCTCTGTTTTCTGCCGCAGA

Product: transcriptional regulator

Products: NA

Alternate protein names: Pyocin repressor protein [H]

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MRKNTSGPRFKALLEAANITTTGFAKFWGTEAQNVHNWYTRGVPAYRMEEVARLLSVNSQWLKTGEGPKDAPHLHTESGD
ILDAHAIRGVYTVLETNDIELPLYKETPVAPGSDKTHVIKDPEQTIRLPRSHLETLEIRYTDAICTHMIGNSMAEKIEDG
STLAIDRGLTQVVDGEIYAIEHDGMLRIKYLHRMPGNALRLRSHNSAEYPDEIFRASQIEEQRIHVLGWVFWWSTLGKRR
PVVPFL

Sequences:

>Translated_246_residues
MRKNTSGPRFKALLEAANITTTGFAKFWGTEAQNVHNWYTRGVPAYRMEEVARLLSVNSQWLKTGEGPKDAPHLHTESGD
ILDAHAIRGVYTVLETNDIELPLYKETPVAPGSDKTHVIKDPEQTIRLPRSHLETLEIRYTDAICTHMIGNSMAEKIEDG
STLAIDRGLTQVVDGEIYAIEHDGMLRIKYLHRMPGNALRLRSHNSAEYPDEIFRASQIEEQRIHVLGWVFWWSTLGKRR
PVVPFL
>Mature_246_residues
MRKNTSGPRFKALLEAANITTTGFAKFWGTEAQNVHNWYTRGVPAYRMEEVARLLSVNSQWLKTGEGPKDAPHLHTESGD
ILDAHAIRGVYTVLETNDIELPLYKETPVAPGSDKTHVIKDPEQTIRLPRSHLETLEIRYTDAICTHMIGNSMAEKIEDG
STLAIDRGLTQVVDGEIYAIEHDGMLRIKYLHRMPGNALRLRSHNSAEYPDEIFRASQIEEQRIHVLGWVFWWSTLGKRR
PVVPFL

Specific function: Represses the promoter activity of the prtN gene [H]

COG id: COG2932

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR019759
- InterPro:   IPR015927
- InterPro:   IPR011056 [H]

Pfam domain/function: PF01381 HTH_3; PF00717 Peptidase_S24 [H]

EC number: NA

Molecular weight: Translated: 27982; Mature: 27982

Theoretical pI: Translated: 6.92; Mature: 6.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKNTSGPRFKALLEAANITTTGFAKFWGTEAQNVHNWYTRGVPAYRMEEVARLLSVNSQ
CCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCHH
WLKTGEGPKDAPHLHTESGDILDAHAIRGVYTVLETNDIELPLYKETPVAPGSDKTHVIK
HHHCCCCCCCCCCCCCCCCCEEHHHHHHHEEEEEECCCCEEEEECCCCCCCCCCCCEEEC
DPEQTIRLPRSHLETLEIRYTDAICTHMIGNSMAEKIEDGSTLAIDRGLTQVVDGEIYAI
CHHHHHHCCHHHHHEEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHCCEEEEE
EHDGMLRIKYLHRMPGNALRLRSHNSAEYPDEIFRASQIEEQRIHVLGWVFWWSTLGKRR
ECCCEEEEEEHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PVVPFL
CCCCCC
>Mature Secondary Structure
MRKNTSGPRFKALLEAANITTTGFAKFWGTEAQNVHNWYTRGVPAYRMEEVARLLSVNSQ
CCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCHH
WLKTGEGPKDAPHLHTESGDILDAHAIRGVYTVLETNDIELPLYKETPVAPGSDKTHVIK
HHHCCCCCCCCCCCCCCCCCEEHHHHHHHEEEEEECCCCEEEEECCCCCCCCCCCCEEEC
DPEQTIRLPRSHLETLEIRYTDAICTHMIGNSMAEKIEDGSTLAIDRGLTQVVDGEIYAI
CHHHHHHCCHHHHHEEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHCCEEEEE
EHDGMLRIKYLHRMPGNALRLRSHNSAEYPDEIFRASQIEEQRIHVLGWVFWWSTLGKRR
ECCCEEEEEEHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PVVPFL
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8444788; 10984043 [H]