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The map label for this gene is ppdD [C]

Identifier: 77461063

GI number: 77461063

Start: 5461860

End: 5462261

Strand: Reverse

Name: ppdD [C]

Synonym: Pfl01_4842

Alternate gene names: 77461063

Gene position: 5462261-5461860 (Counterclockwise)

Preceding gene: 77461064

Following gene: 77461062

Centisome position: 84.84

GC content: 55.97

Gene sequence:

>402_bases
ATGCGCAGATCCAACCGAGGTTTCACCCTGATCGAAATCATGATCGTGATTGCGATCATCGGTATCGTCATCACCATCGG
CTATCCGAGCCTCACCGAATACGTAAAGAAGGGCCGCCGTGCCGACGTAGTCAGCAATTTGTCGGAACAGGCACAGATCC
TCGAACGCTTCTATTCGAAGAACAACGTCTACACCGGTGTCACTGGGTTGAGCACCGGCAACGATTTCTACACCATCACG
CCGACGATCACCGATCAGACCTTCCAGCTGACCGCGACCCGCAAGACCGGCACGGCTATGGCCACTGACAAGTGCGGGGA
TTTCACTCTCACCAACACCGGTGTCAGAAGCATGAACAACGCGACCACCGGGCTGACTACCAAGGATTGCTGGGGCCGCT
GA

Upstream 100 bases:

>100_bases
GAACGATTCCAGTGGCGGTATCACCACCCTGGTGGAAAAATCCGGCGGCGGCAGCCGTCGTATCATGTGGCGGCAAATTC
AGTAAGCGAGAGTTCGAGGC

Downstream 100 bases:

>100_bases
GCCGCTTTATTTCGGGCGCCTTTTGCGCCCACTGTCTTTTTACGGTTGGATCAAACATGACCAGGCAACAGCAAGTGGTG
ATTGTCGGTGGCGGGGTGAT

Product: hypothetical protein

Products: NA

Alternate protein names: Type IV Pilus Biogenesis Protein; Type IV Pilus-Like Protein; Type IV Pilus Biogenesis Protein PilE

Number of amino acids: Translated: 133; Mature: 133

Protein sequence:

>133_residues
MRRSNRGFTLIEIMIVIAIIGIVITIGYPSLTEYVKKGRRADVVSNLSEQAQILERFYSKNNVYTGVTGLSTGNDFYTIT
PTITDQTFQLTATRKTGTAMATDKCGDFTLTNTGVRSMNNATTGLTTKDCWGR

Sequences:

>Translated_133_residues
MRRSNRGFTLIEIMIVIAIIGIVITIGYPSLTEYVKKGRRADVVSNLSEQAQILERFYSKNNVYTGVTGLSTGNDFYTIT
PTITDQTFQLTATRKTGTAMATDKCGDFTLTNTGVRSMNNATTGLTTKDCWGR
>Mature_133_residues
MRRSNRGFTLIEIMIVIAIIGIVITIGYPSLTEYVKKGRRADVVSNLSEQAQILERFYSKNNVYTGVTGLSTGNDFYTIT
PTITDQTFQLTATRKTGTAMATDKCGDFTLTNTGVRSMNNATTGLTTKDCWGR

Specific function: Not Yet Known. [C]

COG id: COG4968

COG function: function code NU; Tfp pilus assembly protein PilE

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14662; Mature: 14662

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: PS00409 PROKAR_NTER_METHYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRSNRGFTLIEIMIVIAIIGIVITIGYPSLTEYVKKGRRADVVSNLSEQAQILERFYSK
CCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
NNVYTGVTGLSTGNDFYTITPTITDQTFQLTATRKTGTAMATDKCGDFTLTNTGVRSMNN
CCEEECEEECCCCCCEEEEECCCCCCEEEEEEECCCCCEEECCCCCCEEEECCCCCCCCC
ATTGLTTKDCWGR
CCCCCCCCCCCCC
>Mature Secondary Structure
MRRSNRGFTLIEIMIVIAIIGIVITIGYPSLTEYVKKGRRADVVSNLSEQAQILERFYSK
CCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
NNVYTGVTGLSTGNDFYTITPTITDQTFQLTATRKTGTAMATDKCGDFTLTNTGVRSMNN
CCEEECEEECCCCCCEEEEECCCCCCEEEEEEECCCCCEEECCCCCCEEEECCCCCCCCC
ATTGLTTKDCWGR
CCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA