Click here to switch to the map view.

The map label for this gene is pilA [H]

Identifier: 77461040

GI number: 77461040

Start: 5439071

End: 5439487

Strand: Reverse

Name: pilA [H]

Synonym: Pfl01_4819

Alternate gene names: 77461040

Gene position: 5439487-5439071 (Counterclockwise)

Preceding gene: 77461046

Following gene: 77461039

Centisome position: 84.49

GC content: 56.59

Gene sequence:

>417_bases
ATGAAGAAACAACAAGGTTTCACTCTGATCGAGCTGCTGATCGTTGTGGCGATCATCGGGATTCTGGCGACGATTGCCTT
GCCGCAGTACTCCAAATATCAGGCGCGGGCCAAGGTCACGGCGGGGATTGCCGAAGCGTCGGCGCTGAAGGTCAACTTCG
AAGATGTCATCAATGCCGGCTCTACTGATCCGAGCATAACTAACGTCAATGCAGGTACGACTGCTACACAAAATTGCACG
CTGGCGGCGAGCGGTAAAGTTGCCGACGGCACAGGGACCATCACCTGCACCTTGCTCAACGCTCCGGCGCCTGTGTTGGG
GCAAACCGTCACCCTGACCCGTACAGCGGCAGCAGGTTGGTCGTGCAAGTTCTCTGGTTCGAAAGACTATTCGACCACCA
GTTGCCCGGGCGTTTGA

Upstream 100 bases:

>100_bases
CCGGGTCACGCCCAGCAGGCCGGGGCTGCGAGCGCTTGGCACGGGCTGTGCTGAGTCAATTTCAGATCATGAGATTCCGA
CTCATGCATGGAGCGTGTCT

Downstream 100 bases:

>100_bases
TCCACACTGCTTAAAGCTGCTGCTCTATAAAGAATGCCCCGCACTGCGGGGCTTTTTTTTGGCTGACGGTTTAATAAAAG
CTTCAATTATTTCAGCGAGT

Product: general secretion pathway protein H

Products: NA

Alternate protein names: Pilin [H]

Number of amino acids: Translated: 138; Mature: 138

Protein sequence:

>138_residues
MKKQQGFTLIELLIVVAIIGILATIALPQYSKYQARAKVTAGIAEASALKVNFEDVINAGSTDPSITNVNAGTTATQNCT
LAASGKVADGTGTITCTLLNAPAPVLGQTVTLTRTAAAGWSCKFSGSKDYSTTSCPGV

Sequences:

>Translated_138_residues
MKKQQGFTLIELLIVVAIIGILATIALPQYSKYQARAKVTAGIAEASALKVNFEDVINAGSTDPSITNVNAGTTATQNCT
LAASGKVADGTGTITCTLLNAPAPVLGQTVTLTRTAAAGWSCKFSGSKDYSTTSCPGV
>Mature_138_residues
MKKQQGFTLIELLIVVAIIGILATIALPQYSKYQARAKVTAGIAEASALKVNFEDVINAGSTDPSITNVNAGTTATQNCT
LAASGKVADGTGTITCTLLNAPAPVLGQTVTLTRTAAAGWSCKFSGSKDYSTTSCPGV

Specific function: Not Yet Known. [C]

COG id: COG4969

COG function: function code NU; Tfp pilus assembly protein, major pilin PilA

Gene ontology:

Cell location: Fimbrium [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N-Me-Phe pilin family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000983
- InterPro:   IPR001082
- InterPro:   IPR012902
- InterPro:   IPR001120 [H]

Pfam domain/function: PF07963 N_methyl; PF00114 Pilin [H]

EC number: NA

Molecular weight: Translated: 14069; Mature: 14069

Theoretical pI: Translated: 8.64; Mature: 8.64

Prosite motif: PS00409 PROKAR_NTER_METHYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKQQGFTLIELLIVVAIIGILATIALPQYSKYQARAKVTAGIAEASALKVNFEDVINAG
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEEEHHHHHCCC
STDPSITNVNAGTTATQNCTLAASGKVADGTGTITCTLLNAPAPVLGQTVTLTRTAAAGW
CCCCCEEECCCCCCCCCCEEEEECCEEECCCCEEEEEEECCCCCHHCCEEEEEEECCCCC
SCKFSGSKDYSTTSCPGV
EEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MKKQQGFTLIELLIVVAIIGILATIALPQYSKYQARAKVTAGIAEASALKVNFEDVINAG
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEEEHHHHHCCC
STDPSITNVNAGTTATQNCTLAASGKVADGTGTITCTLLNAPAPVLGQTVTLTRTAAAGW
CCCCCEEECCCCCCCCCCEEEEECCEEECCCCEEEEEEECCCCCHHCCEEEEEEECCCCC
SCKFSGSKDYSTTSCPGV
EEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7905475 [H]