| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is 77461014
Identifier: 77461014
GI number: 77461014
Start: 5409193
End: 5410749
Strand: Direct
Name: 77461014
Synonym: Pfl01_4793
Alternate gene names: NA
Gene position: 5409193-5410749 (Clockwise)
Preceding gene: 77461010
Following gene: 77461015
Centisome position: 84.01
GC content: 60.5
Gene sequence:
>1557_bases GTGAGCCAGTCCCTGATCGCTGCCCTGCAAAACCCGGCCCTCTACCCGCATCCCGTCGAAGGGTTCCAGGTCATCGAAAC CCATATCTCGTGGGTACTGCTCACCGGTCCCTACGCCTATAAAGTGAAGAAACCGGTGAACTTCGGTTTCCTCGACTTCA CCAGCCTCGAATCCCGTGAGCACTTCTGCGGTGAAGAGCTGCGCCTGAACCAGCGCCTGACCGAAGATTTGTATCTGGAA GTGATTCCAGTGACCGGCAGCGCCGAAGCCCCGCAACTGGGTGGCGACGGCCCGGCCATCGAGTACGTGCTGAAAATGCG TCAGTTCCCGCAGTCCGGCCTGCTCAGCACCCTGCAAGCCAACGGCGAGCTGACCACCGCGCACATCGACGCGATGGCCG AGCAAATCGCCCGCTTCCACCTCAACGCGCCGAAAGTCCCGGCCGAGCACGATGCCGGCACGCCTGAAAGCGTGATGGCG CCGGTACGCCAGAACTTCGAACAGATCCTGCCGTTCCTCAGCGACAAGAACGATCTGCTGCAACTCGACGCTCTGCAAGC ATGGGCTGAAAGCAGCTTCGATCGCCTCAAGCCGCTGTTCGCCCAACGCAAGACCGACGGTTTCACTCGCGAATGCCACG GTGACATTCACCTGGGCAACGCCACGCTGATCGACGGCAAGGTCGTGATCTTCGACTGCATCGAATTCAACGAACCGTTC CGCTTCACCGACGTATGGGCCGACACCGGCTTCCTGGCGATGGACCTTGAAGACCGTGGCCTGAAATCCCTGGCCCGTCG TTTCATCAGCCAATACCTGGAACTGACCGGCGACTATCAAGGCCTGGAAGTGCTGAACTTCTACAAAGCGTACCGTGCGC TGGTGCGTGCGAAAGTCGCACTGTTCAGCATGCCGGCCGACGCGACACCGGTGCAGCGCGCCACCACCCTGCGCCAGTAC CGCAACTACGCCAACCTGGCGGAAAGCTACAGCACCATTCCTTCGCGCTTCATGGCGATCACCCATGGCGTTTCCGCTGT CGGTAAAAGCCATGTGGCCATGCGTCTGGTCGAAGCACTGGGCGCGATCCGCCTGCGTTCCGATGTCGAGCGCAAACGTC TGTTCGGTGAGCAAACCGTTGCCAATGATGTTCAGGCCGGGATCTACAGCACCGACGCCAGCACTGCAACCTATGCGCGT CTGCATGAAATTGCCGAAGTGATTTTGCACGCCGGTTTCCCGGTGGTGATCGATGCCACTTACCTCAAGCGCGAACAACG CGACAACGCCGCCAAAGTCGCTGAAGCCACTGGCACGCCTTTCCTGATCCTTGACTGCAACGCTCCGCAGGCAGTGATCG AGAGCTGGCTGGCGATTCGTCAGGCAGACAAAAAGGATCCGTCCGACGCGACCCTTGCCGTGATCGAAGCACAACAGGCC AACCGCGAAGCCCTGACGCCGGAAGAAATCCTGCGCAGCAAACGCGTGCAGACCAATGAGTCCGGCACCCTGGACACCGT TGTGGCGCAGATCCGCCAGCGCCTGCCAGGTCTGTAA
Upstream 100 bases:
>100_bases CTTTATTCATACTCAACAGGAGCGCTCCGAGGTTTGCGTCGGGCTGGCGAGCGGCCATAATGAGCGCCTTGAACTTCCCC CAGTCTCTGAAGGATCGTCC
Downstream 100 bases:
>100_bases GAAACTATTTCGGCCGTGAAGCCCTCGCCCGCTTCACGGCCGTCAAATAGTGGCACTATACTGGCGTCATAAAACCAACA GGTGATTTGACATGAGCCAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 518; Mature: 517
Protein sequence:
>518_residues MSQSLIAALQNPALYPHPVEGFQVIETHISWVLLTGPYAYKVKKPVNFGFLDFTSLESREHFCGEELRLNQRLTEDLYLE VIPVTGSAEAPQLGGDGPAIEYVLKMRQFPQSGLLSTLQANGELTTAHIDAMAEQIARFHLNAPKVPAEHDAGTPESVMA PVRQNFEQILPFLSDKNDLLQLDALQAWAESSFDRLKPLFAQRKTDGFTRECHGDIHLGNATLIDGKVVIFDCIEFNEPF RFTDVWADTGFLAMDLEDRGLKSLARRFISQYLELTGDYQGLEVLNFYKAYRALVRAKVALFSMPADATPVQRATTLRQY RNYANLAESYSTIPSRFMAITHGVSAVGKSHVAMRLVEALGAIRLRSDVERKRLFGEQTVANDVQAGIYSTDASTATYAR LHEIAEVILHAGFPVVIDATYLKREQRDNAAKVAEATGTPFLILDCNAPQAVIESWLAIRQADKKDPSDATLAVIEAQQA NREALTPEEILRSKRVQTNESGTLDTVVAQIRQRLPGL
Sequences:
>Translated_518_residues MSQSLIAALQNPALYPHPVEGFQVIETHISWVLLTGPYAYKVKKPVNFGFLDFTSLESREHFCGEELRLNQRLTEDLYLE VIPVTGSAEAPQLGGDGPAIEYVLKMRQFPQSGLLSTLQANGELTTAHIDAMAEQIARFHLNAPKVPAEHDAGTPESVMA PVRQNFEQILPFLSDKNDLLQLDALQAWAESSFDRLKPLFAQRKTDGFTRECHGDIHLGNATLIDGKVVIFDCIEFNEPF RFTDVWADTGFLAMDLEDRGLKSLARRFISQYLELTGDYQGLEVLNFYKAYRALVRAKVALFSMPADATPVQRATTLRQY RNYANLAESYSTIPSRFMAITHGVSAVGKSHVAMRLVEALGAIRLRSDVERKRLFGEQTVANDVQAGIYSTDASTATYAR LHEIAEVILHAGFPVVIDATYLKREQRDNAAKVAEATGTPFLILDCNAPQAVIESWLAIRQADKKDPSDATLAVIEAQQA NREALTPEEILRSKRVQTNESGTLDTVVAQIRQRLPGL >Mature_517_residues SQSLIAALQNPALYPHPVEGFQVIETHISWVLLTGPYAYKVKKPVNFGFLDFTSLESREHFCGEELRLNQRLTEDLYLEV IPVTGSAEAPQLGGDGPAIEYVLKMRQFPQSGLLSTLQANGELTTAHIDAMAEQIARFHLNAPKVPAEHDAGTPESVMAP VRQNFEQILPFLSDKNDLLQLDALQAWAESSFDRLKPLFAQRKTDGFTRECHGDIHLGNATLIDGKVVIFDCIEFNEPFR FTDVWADTGFLAMDLEDRGLKSLARRFISQYLELTGDYQGLEVLNFYKAYRALVRAKVALFSMPADATPVQRATTLRQYR NYANLAESYSTIPSRFMAITHGVSAVGKSHVAMRLVEALGAIRLRSDVERKRLFGEQTVANDVQAGIYSTDASTATYARL HEIAEVILHAGFPVVIDATYLKREQRDNAAKVAEATGTPFLILDCNAPQAVIESWLAIRQADKKDPSDATLAVIEAQQAN REALTPEEILRSKRVQTNESGTLDTVVAQIRQRLPGL
Specific function: Some isolated peptides of this protein are able to bind to human U937 monocytoblastic and A549 epithelial cell lines [H]
COG id: COG2187
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Secreted, cell wall [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011009 - InterPro: IPR010488 [H]
Pfam domain/function: PF06414 Zeta_toxin [H]
EC number: NA
Molecular weight: Translated: 57593; Mature: 57462
Theoretical pI: Translated: 5.50; Mature: 5.50
Prosite motif: PS00639 THIOL_PROTEASE_HIS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQSLIAALQNPALYPHPVEGFQVIETHISWVLLTGPYAYKVKKPVNFGFLDFTSLESRE CCCHHHHHHHCCCCCCCCCCHHHHHHHHHCEEEEECCEEEEEECCCCCCCEECCCCCCHH HFCGEELRLNQRLTEDLYLEVIPVTGSAEAPQLGGDGPAIEYVLKMRQFPQSGLLSTLQA HHCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHC NGELTTAHIDAMAEQIARFHLNAPKVPAEHDAGTPESVMAPVRQNFEQILPFLSDKNDLL CCCEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHH QLDALQAWAESSFDRLKPLFAQRKTDGFTRECHGDIHLGNATLIDGKVVIFDCIEFNEPF HHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHCCCCEEECCEEEECCCEEEEEEECCCCCC RFTDVWADTGFLAMDLEDRGLKSLARRFISQYLELTGDYQGLEVLNFYKAYRALVRAKVA EEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH LFSMPADATPVQRATTLRQYRNYANLAESYSTIPSRFMAITHGVSAVGKSHVAMRLVEAL HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GAIRLRSDVERKRLFGEQTVANDVQAGIYSTDASTATYARLHEIAEVILHAGFPVVIDAT HHHHHHHHHHHHHHHCHHHHHHHHHCCEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEHH YLKREQRDNAAKVAEATGTPFLILDCNAPQAVIESWLAIRQADKKDPSDATLAVIEAQQA HHHHHHCCCHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHC NREALTPEEILRSKRVQTNESGTLDTVVAQIRQRLPGL CCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCC >Mature Secondary Structure SQSLIAALQNPALYPHPVEGFQVIETHISWVLLTGPYAYKVKKPVNFGFLDFTSLESRE CCHHHHHHHCCCCCCCCCCHHHHHHHHHCEEEEECCEEEEEECCCCCCCEECCCCCCHH HFCGEELRLNQRLTEDLYLEVIPVTGSAEAPQLGGDGPAIEYVLKMRQFPQSGLLSTLQA HHCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHC NGELTTAHIDAMAEQIARFHLNAPKVPAEHDAGTPESVMAPVRQNFEQILPFLSDKNDLL CCCEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHH QLDALQAWAESSFDRLKPLFAQRKTDGFTRECHGDIHLGNATLIDGKVVIFDCIEFNEPF HHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHCCCCEEECCEEEECCCEEEEEEECCCCCC RFTDVWADTGFLAMDLEDRGLKSLARRFISQYLELTGDYQGLEVLNFYKAYRALVRAKVA EEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH LFSMPADATPVQRATTLRQYRNYANLAESYSTIPSRFMAITHGVSAVGKSHVAMRLVEAL HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GAIRLRSDVERKRLFGEQTVANDVQAGIYSTDASTATYARLHEIAEVILHAGFPVVIDAT HHHHHHHHHHHHHHHCHHHHHHHHHCCEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEHH YLKREQRDNAAKVAEATGTPFLILDCNAPQAVIESWLAIRQADKKDPSDATLAVIEAQQA HHHHHHCCCHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHC NREALTPEEILRSKRVQTNESGTLDTVVAQIRQRLPGL CCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]