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The map label for this gene is yddE [C]

Identifier: 77460750

GI number: 77460750

Start: 5103072

End: 5103854

Strand: Reverse

Name: yddE [C]

Synonym: Pfl01_4529

Alternate gene names: 77460750

Gene position: 5103854-5103072 (Counterclockwise)

Preceding gene: 77460751

Following gene: 77460747

Centisome position: 79.27

GC content: 62.71

Gene sequence:

>783_bases
ATGCAGCTCGAGTTTCATCAGGTCGACGCGTTCAGTGATCGGCCCTTCAGCGGTAATCCGGCAATGGTCTATCGGCTCGA
CGCGTGGCTCGCGGACGAACTGATGCAGAAGATCGCCGCCGAGCACAATCTGGCGGAAACCGCGTTTCTGGTGCGCGAGG
GGCAGGTGTGGCACATCCGCTGGTTCACGCCGACCACCGAAGTGCCGCTGTGTGGTCACGCGACCCTGGCCAGCGCCTAC
GTGCTGTTCGAGATCTATAAGGAAACGGCCGAGCGTCTGGACTTCACCTGCAAGTCCGGGCCGTTGAGCGTCAGCCGCGA
AGGCGACAGGCTGTGGCTCGATTTCCCGGCCATCGAAGCGGTGGAGAAAGGCGTCACCCTGGAGATCGAGCGGGCGCTGA
ATGTTCAGGCGGTGGACGTCCTGAGTTCCAACGAACTATTTGTGGTGCTGGAGTCCGAGCAGGCGGTGCTCGATTGCACG
CCGGACATGATCGCCCTCGCCAAGCTGCCGTGGCTGGGCGCGATCGTCACCGCGCGGGGCAATCAGCATGATTTTGTCTC
GCGCTATTTCGCCCCGGCGATCGGTATCAATGAAGACCCGGTCACCGGCTCGACCCATTGCAGCCTGATTCCGTACTGGT
CGAAACGTCTGGGCAAATCCAGCCTGACCGCGTGCCAGCGTTCGGCGCGGGGCGGTGAACTGTTCTGTCGGCTGGAGGGC
GAGCGAGTGAAGATCGGTGGGAATGCGACGCTGGTGGCCAGCGGCACATTGATGCTGGGCTGA

Upstream 100 bases:

>100_bases
GTCGCCCTTGACGTCTGTATGAAGAAAATTGGCCGGCACTGTCACTGGCGCTGATCCGGCCGGCGCTGCATGCTCGTTCG
ACTGACACAGGGAGAAGGTT

Downstream 100 bases:

>100_bases
GAGCAAAAAAACAAGGGAGCCATCAGGCTCCCTCATTGTTTGGGTGCAGATCAGTGCGCAGTACTGTAACGGCGGACGCC
GTTTTCCACCGCCGGAATCT

Product: phenazine biosynthesis PhzC/PhzF protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MQLEFHQVDAFSDRPFSGNPAMVYRLDAWLADELMQKIAAEHNLAETAFLVREGQVWHIRWFTPTTEVPLCGHATLASAY
VLFEIYKETAERLDFTCKSGPLSVSREGDRLWLDFPAIEAVEKGVTLEIERALNVQAVDVLSSNELFVVLESEQAVLDCT
PDMIALAKLPWLGAIVTARGNQHDFVSRYFAPAIGINEDPVTGSTHCSLIPYWSKRLGKSSLTACQRSARGGELFCRLEG
ERVKIGGNATLVASGTLMLG

Sequences:

>Translated_260_residues
MQLEFHQVDAFSDRPFSGNPAMVYRLDAWLADELMQKIAAEHNLAETAFLVREGQVWHIRWFTPTTEVPLCGHATLASAY
VLFEIYKETAERLDFTCKSGPLSVSREGDRLWLDFPAIEAVEKGVTLEIERALNVQAVDVLSSNELFVVLESEQAVLDCT
PDMIALAKLPWLGAIVTARGNQHDFVSRYFAPAIGINEDPVTGSTHCSLIPYWSKRLGKSSLTACQRSARGGELFCRLEG
ERVKIGGNATLVASGTLMLG
>Mature_260_residues
MQLEFHQVDAFSDRPFSGNPAMVYRLDAWLADELMQKIAAEHNLAETAFLVREGQVWHIRWFTPTTEVPLCGHATLASAY
VLFEIYKETAERLDFTCKSGPLSVSREGDRLWLDFPAIEAVEKGVTLEIERALNVQAVDVLSSNELFVVLESEQAVLDCT
PDMIALAKLPWLGAIVTARGNQHDFVSRYFAPAIGINEDPVTGSTHCSLIPYWSKRLGKSSLTACQRSARGGELFCRLEG
ERVKIGGNATLVASGTLMLG

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=286, Percent_Identity=39.5104895104895, Blast_Score=161, Evalue=6e-40,
Organism=Homo sapiens, GI74316009, Length=250, Percent_Identity=38, Blast_Score=139, Evalue=3e-33,
Organism=Escherichia coli, GI1787737, Length=294, Percent_Identity=28.9115646258503, Blast_Score=88, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI17542160, Length=307, Percent_Identity=32.8990228013029, Blast_Score=145, Evalue=1e-35,
Organism=Caenorhabditis elegans, GI17542154, Length=307, Percent_Identity=32.8990228013029, Blast_Score=145, Evalue=1e-35,
Organism=Caenorhabditis elegans, GI17542158, Length=312, Percent_Identity=33.3333333333333, Blast_Score=124, Evalue=5e-29,
Organism=Caenorhabditis elegans, GI17542152, Length=312, Percent_Identity=33.3333333333333, Blast_Score=124, Evalue=5e-29,
Organism=Saccharomyces cerevisiae, GI6321818, Length=290, Percent_Identity=25.5172413793103, Blast_Score=87, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 28733; Mature: 28733

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLEFHQVDAFSDRPFSGNPAMVYRLDAWLADELMQKIAAEHNLAETAFLVREGQVWHIR
CCCEEEECCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCHHHHEEEEECCCEEEEE
WFTPTTEVPLCGHATLASAYVLFEIYKETAERLDFTCKSGPLSVSREGDRLWLDFPAIEA
EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEECCCCEEEECCCCEEEEECCHHHH
VEKGVTLEIERALNVQAVDVLSSNELFVVLESEQAVLDCTPDMIALAKLPWLGAIVTARG
HHCCCEEEEECCCCEEEEEEECCCCEEEEECCCCEEEECCCCHHHHHCCCCCEEEEEECC
NQHDFVSRYFAPAIGINEDPVTGSTHCSLIPYWSKRLGKSSLTACQRSARGGELFCRLEG
CCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHCCHHHHHHHHHCCCCCEEEEEEEC
ERVKIGGNATLVASGTLMLG
CEEEECCCEEEEEECEEEEC
>Mature Secondary Structure
MQLEFHQVDAFSDRPFSGNPAMVYRLDAWLADELMQKIAAEHNLAETAFLVREGQVWHIR
CCCEEEECCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCHHHHEEEEECCCEEEEE
WFTPTTEVPLCGHATLASAYVLFEIYKETAERLDFTCKSGPLSVSREGDRLWLDFPAIEA
EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEECCCCEEEECCCCEEEEECCHHHH
VEKGVTLEIERALNVQAVDVLSSNELFVVLESEQAVLDCTPDMIALAKLPWLGAIVTARG
HHCCCEEEEECCCCEEEEEEECCCCEEEEECCCCEEEECCCCHHHHHCCCCCEEEEEECC
NQHDFVSRYFAPAIGINEDPVTGSTHCSLIPYWSKRLGKSSLTACQRSARGGELFCRLEG
CCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHCCHHHHHHHHHCCCCCEEEEEEEC
ERVKIGGNATLVASGTLMLG
CEEEECCCEEEEEECEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]