| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is yjgR [H]
Identifier: 77460651
GI number: 77460651
Start: 4989063
End: 4990550
Strand: Reverse
Name: yjgR [H]
Synonym: Pfl01_4430
Alternate gene names: 77460651
Gene position: 4990550-4989063 (Counterclockwise)
Preceding gene: 77460656
Following gene: 255961263
Centisome position: 77.51
GC content: 64.52
Gene sequence:
>1488_bases ATGCCTGACTCCTCGCAACTCGTAATCGGCGCCGACCTCGCCGGGCAACCGATCGCTCAGGCCATGCGCCTGGCCAACCG TCACGGACTGGTGGCCGGGGCTACCGGTACCGGCAAGACCGTCACCTTGCAGCGCCTGGCCGAGGCGTTCAGCGACGCCG GGGTTGCGGTGTTCGCCGCCGACGTCAAGGGCGACCTGTGCGGCCTCGGTGCTGCCGGCAACCCTCAGGGCAAGATCGCC GAGCGCATCGCCGGCATGCCGTGGCTCAATCACAAGCCTCAGGCGTATCCTGTGACCTTGTGGGACATCCACGGTCAGTC CGGTCATCCGCTGCGCACTACGTTGAGTGAAATGGGCCCGCTGCTGATCGGCGCCTTACTGGAACTGACCGACAGCCAGC AGTCGGCGCTGTACGCAGCGTTCAAGGTGGCGGATCGCGAAGGCCTGTTGTTGCTGGATCTCAAGGATCTGAAGGCACTG CTCAATCATCTCAAGGACAATCCGCAACTGCTGGGCGAAGACGCGGCGCTGTTCACCACCGGCTCCAGTCAGGCGCTGTT GCGGCGTCTGGCGACGCTGGAGCAGCAGGGCGCCGAGGCGTTGTTCGGCGAGCCGGCGTTGCAACTCGAAGACATTCTGC AGCCGACCGCCGACGGTCGCGGACGCATTCATCTGCTGGATGCCAGTCGTCTGGTGCATGAGGCGCCGAAGGTCTATGCA ACGTTCCTGCTGTGGCTGCTGGCCGAACTGTTCGAGCAATTGCCTGAGCGTGGCGATGCCGACAAACCGTTGCTGGCGCT GTTTTTCGATGAGGCGCATTTGTTGTTCGGTGACACGCCCAAGGCATTGCAGGAGCGGCTTGAGCAAGTGGTGCGGCTGA TTCGCTCGAAAGGTGTGGGCGTGTATTTCGTCACCCAGTCGCCGGGCGATCTGCCGGACGATGTGCTGGCGCAACTGGGG CTGCGGATCCAGCACGGCCTGCGCGCATTTACTGCCAAGGAGCAGAAATCCCTGCGGGCGGTGGCGGATGGCTTCCGGCC GAATCCGGCGTTCGACACATTGTCGGTGCTCACCGAACTCGGGATTGGCGAGGCCCTGGTCGGCACCTTGCAAGAAAAGG GCACGCCGGAAATGGCGCAGCGGGTGCTGGTGGCGCCGCCGCAATCGCGGATCGGGCCGTTGACCGAGACTGAGCGCACA ATGCTGATCGCCGGTTCGCCGTTCAAGGGCCGTTATGACAAACCGATTGATCGCGAGTCGGCCTATGAAATCCTGATGGG GCGCAAGGGGCTGGCGCCGGAGGCTGAAGCGGCGCCGGGCAAACCGGCCGCTGAAGAGCCAAGCCTGGCGGACAGGGCCG GAGAATTTCTCGGCACGGCGGCGGGGCAGGCGCTCAAGTCGGCGATGCGCCAGGCAGCGAACTCGCTGGGTAAACAATTG GTGCGCGGCCTGATGGGGTCATTGCTCGGTGGCAGCAAACGCCGCTGA
Upstream 100 bases:
>100_bases TCCGCTTCTCCTTAGGGAAATCTCCGATGCGGATGTCAGTCGCATCTGTCACCTTTAGCTATCGGCCATGATCGACAAAG ATTAACCATTGGGTGACCAA
Downstream 100 bases:
>100_bases TCAATAAGGCTCAGGCCTTGGGTTTGGCGTGGGCGGCCAGTCGTTCCAGTGCTGCCCGCAGATTCGGATCGCTGATCCCG TCGGCGGTGGCCTGGATGGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 495; Mature: 494
Protein sequence:
>495_residues MPDSSQLVIGADLAGQPIAQAMRLANRHGLVAGATGTGKTVTLQRLAEAFSDAGVAVFAADVKGDLCGLGAAGNPQGKIA ERIAGMPWLNHKPQAYPVTLWDIHGQSGHPLRTTLSEMGPLLIGALLELTDSQQSALYAAFKVADREGLLLLDLKDLKAL LNHLKDNPQLLGEDAALFTTGSSQALLRRLATLEQQGAEALFGEPALQLEDILQPTADGRGRIHLLDASRLVHEAPKVYA TFLLWLLAELFEQLPERGDADKPLLALFFDEAHLLFGDTPKALQERLEQVVRLIRSKGVGVYFVTQSPGDLPDDVLAQLG LRIQHGLRAFTAKEQKSLRAVADGFRPNPAFDTLSVLTELGIGEALVGTLQEKGTPEMAQRVLVAPPQSRIGPLTETERT MLIAGSPFKGRYDKPIDRESAYEILMGRKGLAPEAEAAPGKPAAEEPSLADRAGEFLGTAAGQALKSAMRQAANSLGKQL VRGLMGSLLGGSKRR
Sequences:
>Translated_495_residues MPDSSQLVIGADLAGQPIAQAMRLANRHGLVAGATGTGKTVTLQRLAEAFSDAGVAVFAADVKGDLCGLGAAGNPQGKIA ERIAGMPWLNHKPQAYPVTLWDIHGQSGHPLRTTLSEMGPLLIGALLELTDSQQSALYAAFKVADREGLLLLDLKDLKAL LNHLKDNPQLLGEDAALFTTGSSQALLRRLATLEQQGAEALFGEPALQLEDILQPTADGRGRIHLLDASRLVHEAPKVYA TFLLWLLAELFEQLPERGDADKPLLALFFDEAHLLFGDTPKALQERLEQVVRLIRSKGVGVYFVTQSPGDLPDDVLAQLG LRIQHGLRAFTAKEQKSLRAVADGFRPNPAFDTLSVLTELGIGEALVGTLQEKGTPEMAQRVLVAPPQSRIGPLTETERT MLIAGSPFKGRYDKPIDRESAYEILMGRKGLAPEAEAAPGKPAAEEPSLADRAGEFLGTAAGQALKSAMRQAANSLGKQL VRGLMGSLLGGSKRR >Mature_494_residues PDSSQLVIGADLAGQPIAQAMRLANRHGLVAGATGTGKTVTLQRLAEAFSDAGVAVFAADVKGDLCGLGAAGNPQGKIAE RIAGMPWLNHKPQAYPVTLWDIHGQSGHPLRTTLSEMGPLLIGALLELTDSQQSALYAAFKVADREGLLLLDLKDLKALL NHLKDNPQLLGEDAALFTTGSSQALLRRLATLEQQGAEALFGEPALQLEDILQPTADGRGRIHLLDASRLVHEAPKVYAT FLLWLLAELFEQLPERGDADKPLLALFFDEAHLLFGDTPKALQERLEQVVRLIRSKGVGVYFVTQSPGDLPDDVLAQLGL RIQHGLRAFTAKEQKSLRAVADGFRPNPAFDTLSVLTELGIGEALVGTLQEKGTPEMAQRVLVAPPQSRIGPLTETERTM LIAGSPFKGRYDKPIDRESAYEILMGRKGLAPEAEAAPGKPAAEEPSLADRAGEFLGTAAGQALKSAMRQAANSLGKQLV RGLMGSLLGGSKRR
Specific function: Unknown
COG id: COG0433
COG function: function code R; Predicted ATPase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To E.coli yjiB [H]
Homologues:
Organism=Escherichia coli, GI1790714, Length=488, Percent_Identity=49.1803278688525, Blast_Score=444, Evalue=1e-126,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008571 [H]
Pfam domain/function: PF05872 DUF853 [H]
EC number: NA
Molecular weight: Translated: 52880; Mature: 52749
Theoretical pI: Translated: 6.27; Mature: 6.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDSSQLVIGADLAGQPIAQAMRLANRHGLVAGATGTGKTVTLQRLAEAFSDAGVAVFAA CCCCCCEEEECCCCCCHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCEEEEEE DVKGDLCGLGAAGNPQGKIAERIAGMPWLNHKPQAYPVTLWDIHGQSGHPLRTTLSEMGP CCCCCEEECCCCCCCCHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHH LLIGALLELTDSQQSALYAAFKVADREGLLLLDLKDLKALLNHLKDNPQLLGEDAALFTT HHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHCCCCCHHCCCCCEEEEC GSSQALLRRLATLEQQGAEALFGEPALQLEDILQPTADGRGRIHLLDASRLVHEAPKVYA CCHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHH TFLLWLLAELFEQLPERGDADKPLLALFFDEAHLLFGDTPKALQERLEQVVRLIRSKGVG HHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEECCCHHHHHHHHHHHHHHHHHCCCE VYFVTQSPGDLPDDVLAQLGLRIQHGLRAFTAKEQKSLRAVADGFRPNPAFDTLSVLTEL EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH GIGEALVGTLQEKGTPEMAQRVLVAPPQSRIGPLTETERTMLIAGSPFKGRYDKPIDRES CCCHHHHHHHHHCCCHHHHHHEECCCCHHHCCCCCCCCCEEEEECCCCCCCCCCCCCHHH AYEILMGRKGLAPEAEAAPGKPAAEEPSLADRAGEFLGTAAGQALKSAMRQAANSLGKQL HHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VRGLMGSLLGGSKRR HHHHHHHHCCCCCCC >Mature Secondary Structure PDSSQLVIGADLAGQPIAQAMRLANRHGLVAGATGTGKTVTLQRLAEAFSDAGVAVFAA CCCCCEEEECCCCCCHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCEEEEEE DVKGDLCGLGAAGNPQGKIAERIAGMPWLNHKPQAYPVTLWDIHGQSGHPLRTTLSEMGP CCCCCEEECCCCCCCCHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHH LLIGALLELTDSQQSALYAAFKVADREGLLLLDLKDLKALLNHLKDNPQLLGEDAALFTT HHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHCCCCCHHCCCCCEEEEC GSSQALLRRLATLEQQGAEALFGEPALQLEDILQPTADGRGRIHLLDASRLVHEAPKVYA CCHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHH TFLLWLLAELFEQLPERGDADKPLLALFFDEAHLLFGDTPKALQERLEQVVRLIRSKGVG HHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEECCCHHHHHHHHHHHHHHHHHCCCE VYFVTQSPGDLPDDVLAQLGLRIQHGLRAFTAKEQKSLRAVADGFRPNPAFDTLSVLTEL EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH GIGEALVGTLQEKGTPEMAQRVLVAPPQSRIGPLTETERTMLIAGSPFKGRYDKPIDRES CCCHHHHHHHHHCCCHHHHHHEECCCCHHHCCCCCCCCCEEEEECCCCCCCCCCCCCHHH AYEILMGRKGLAPEAEAAPGKPAAEEPSLADRAGEFLGTAAGQALKSAMRQAANSLGKQL HHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VRGLMGSLLGGSKRR HHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7610040; 9278503 [H]