| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is slyX
Identifier: 77460637
GI number: 77460637
Start: 4974320
End: 4974526
Strand: Reverse
Name: slyX
Synonym: Pfl01_4416
Alternate gene names: 77460637
Gene position: 4974526-4974320 (Counterclockwise)
Preceding gene: 77460638
Following gene: 77460635
Centisome position: 77.26
GC content: 55.07
Gene sequence:
>207_bases ATGAGCCTCGAACAACGTGTTACCGAGCTGGAAAGTCGTCTGGCATTTCAGGACGACACCATTCAGGCATTGAACGATGT GCTGGTGGAGCAGCAGCGAGTGGTTGAGCGTCTGCAACTGCAGATGGCAGCCGTACTCAAGCGCCAGGAAGAGATGGTGG GGCAGTTTGGTTCTTTCGAAGAAGACGCACCGCCGCCACACTATTGA
Upstream 100 bases:
>100_bases GCACCCCGCCAAGCCTTACAGCGCCGAGCAAGTGGCCGCGATCCGCGAGCGCCTGCGCCTGGTGCTGGACGAAGATTTCA CCTTTCTGGAGGGCTGAGTC
Downstream 100 bases:
>100_bases GAAGTGCGCGGGCATGCTCCCGTTAAAAACGCATTCATTAAAAAAACCGCGAACAGCCAGGCTGTTCGCGGTTTTTTTAT TGCGGGACGTGGATCAGCGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 68; Mature: 67
Protein sequence:
>68_residues MSLEQRVTELESRLAFQDDTIQALNDVLVEQQRVVERLQLQMAAVLKRQEEMVGQFGSFEEDAPPPHY
Sequences:
>Translated_68_residues MSLEQRVTELESRLAFQDDTIQALNDVLVEQQRVVERLQLQMAAVLKRQEEMVGQFGSFEEDAPPPHY >Mature_67_residues SLEQRVTELESRLAFQDDTIQALNDVLVEQQRVVERLQLQMAAVLKRQEEMVGQFGSFEEDAPPPHY
Specific function: Unknown
COG id: COG2900
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the slyX family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): SLYX_PSEPF (Q3K7V1)
Other databases:
- EMBL: CP000094 - RefSeq: YP_350144.1 - STRING: Q3K7V1 - GeneID: 3713319 - GenomeReviews: CP000094_GR - KEGG: pfo:Pfl01_4416 - eggNOG: COG2900 - HOGENOM: HBG700945 - OMA: ETRQAFQ - ProtClustDB: PRK00295 - BioCyc: PFLU205922:PFL_4416-MONOMER - HAMAP: MF_00715 - InterPro: IPR007236
Pfam domain/function: PF04102 SlyX
EC number: NA
Molecular weight: Translated: 7889; Mature: 7758
Theoretical pI: Translated: 4.14; Mature: 4.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLEQRVTELESRLAFQDDTIQALNDVLVEQQRVVERLQLQMAAVLKRQEEMVGQFGSFE CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC EDAPPPHY CCCCCCCC >Mature Secondary Structure SLEQRVTELESRLAFQDDTIQALNDVLVEQQRVVERLQLQMAAVLKRQEEMVGQFGSFE CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC EDAPPPHY CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA