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The map label for this gene is yebC [C]

Identifier: 77460631

GI number: 77460631

Start: 4969166

End: 4969912

Strand: Reverse

Name: yebC [C]

Synonym: Pfl01_4410

Alternate gene names: 77460631

Gene position: 4969912-4969166 (Counterclockwise)

Preceding gene: 77460632

Following gene: 77460630

Centisome position: 77.19

GC content: 61.98

Gene sequence:

>747_bases
ATGGCAGGTCATTCCAAGTGGGCGAACATCAAGCACCGCAAAGAACGCCAGGATGCCAAGAGAGGCAAGATCTTCACCAA
GTGGATCCGCGAACTGACCGTTGCGGCCCGTCAGGGTGGCGGTGATCCGGGCTCCAACCCGCGTCTGCGTCTGGCGCTGG
ACAAGGCGCTGGGCGCCAACATGAGTCGCGACATCATCGACCGTGCCGTGGCCCGTGGCGCCGGTGCGACGGAAGCCGAC
AACGTTGAAGAACTGACCTATGAAGGTTACGGCCCAGGCGGCGTGGCGGTGATGGTCGAGTGCATGACCGATAACCGCAA
CCGCACCGCAGCAGCTGTTCGCCACGCGTTCAGCAAGTGTGGCGGCAACCTCGGTACCGACGGTTCGGTAGCCTACCTGT
TCGAACGCAAGGGCCAGATCAGCTTTGCCCCGGGCGTGGACGAAGACGCGCTGACGGAAGCGGCGCTGGAAGCCGATGCC
GACGACGTGGTCAGTCACGAAGATGGCTCGATCGACGTGTTCACCTCGTTCACCAGCTTCTACGCGGTACGCAATGCCCT
GGAAGCCGCAGGTTTCAAGGGTGATGACGCGGAAATCGTCATGCAGCCGACCACCAGCGCCGAACTGGATCTGGAGGGTG
CCGAGAAGGTGCTCAAGCTGATCGACATGCTGGAAGACCTGGACGACGTGCAGAACGTCTACTCCAACGCGGACATTCCG
GAAGACGTGGCCGCTCAGCTCGGTTAA

Upstream 100 bases:

>100_bases
GATGCGCCTTTTTTCTTTCTGCAGTGATTGAAAACAAGATTTTTTTGCTGGCCGATGCACCTGCATGGCGGGCATTGTTC
AAGAGAATTCGGAGCGAGTT

Downstream 100 bases:

>100_bases
GAGCGACTAGGCTCAATGTGGGAGCTGGCTTGCCAGCGATGGCGTCGGCACATCAGCTAATGATGGTGCCTGACACACCG
TCATCGCTGGCAAGCCAGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 247

Protein sequence:

>248_residues
MAGHSKWANIKHRKERQDAKRGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGANMSRDIIDRAVARGAGATEAD
NVEELTYEGYGPGGVAVMVECMTDNRNRTAAAVRHAFSKCGGNLGTDGSVAYLFERKGQISFAPGVDEDALTEAALEADA
DDVVSHEDGSIDVFTSFTSFYAVRNALEAAGFKGDDAEIVMQPTTSAELDLEGAEKVLKLIDMLEDLDDVQNVYSNADIP
EDVAAQLG

Sequences:

>Translated_248_residues
MAGHSKWANIKHRKERQDAKRGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGANMSRDIIDRAVARGAGATEAD
NVEELTYEGYGPGGVAVMVECMTDNRNRTAAAVRHAFSKCGGNLGTDGSVAYLFERKGQISFAPGVDEDALTEAALEADA
DDVVSHEDGSIDVFTSFTSFYAVRNALEAAGFKGDDAEIVMQPTTSAELDLEGAEKVLKLIDMLEDLDDVQNVYSNADIP
EDVAAQLG
>Mature_247_residues
AGHSKWANIKHRKERQDAKRGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGANMSRDIIDRAVARGAGATEADN
VEELTYEGYGPGGVAVMVECMTDNRNRTAAAVRHAFSKCGGNLGTDGSVAYLFERKGQISFAPGVDEDALTEAALEADAD
DVVSHEDGSIDVFTSFTSFYAVRNALEAAGFKGDDAEIVMQPTTSAELDLEGAEKVLKLIDMLEDLDDVQNVYSNADIPE
DVAAQLG

Specific function: Unknown

COG id: COG0217

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TACO1 family

Homologues:

Organism=Homo sapiens, GI27545315, Length=247, Percent_Identity=27.5303643724696, Blast_Score=105, Evalue=3e-23,
Organism=Escherichia coli, GI1788171, Length=247, Percent_Identity=65.1821862348178, Blast_Score=335, Evalue=1e-93,
Organism=Escherichia coli, GI1788294, Length=235, Percent_Identity=39.5744680851064, Blast_Score=150, Evalue=6e-38,
Organism=Caenorhabditis elegans, GI17556100, Length=243, Percent_Identity=27.1604938271605, Blast_Score=79, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6321458, Length=264, Percent_Identity=32.9545454545455, Blast_Score=129, Evalue=3e-31,
Organism=Drosophila melanogaster, GI24583305, Length=251, Percent_Identity=28.6852589641434, Blast_Score=86, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4410_PSEPF (Q3K7V7)

Other databases:

- EMBL:   CP000094
- RefSeq:   YP_350138.1
- ProteinModelPortal:   Q3K7V7
- SMR:   Q3K7V7
- STRING:   Q3K7V7
- GeneID:   3713313
- GenomeReviews:   CP000094_GR
- KEGG:   pfo:Pfl01_4410
- eggNOG:   COG0217
- HOGENOM:   HBG715231
- OMA:   VYANFDI
- ProtClustDB:   PRK00110
- BioCyc:   PFLU205922:PFL_4410-MONOMER
- HAMAP:   MF_00693
- InterPro:   IPR002876
- InterPro:   IPR017856
- Gene3D:   G3DSA:1.10.10.200
- PANTHER:   PTHR12532
- TIGRFAMs:   TIGR01033

Pfam domain/function: PF01709 DUF28; SSF75625 DUF28

EC number: NA

Molecular weight: Translated: 26583; Mature: 26452

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGHSKWANIKHRKERQDAKRGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGAN
CCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHCCC
MSRDIIDRAVARGAGATEADNVEELTYEGYGPGGVAVMVECMTDNRNRTAAAVRHAFSKC
CHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
GGNLGTDGSVAYLFERKGQISFAPGVDEDALTEAALEADADDVVSHEDGSIDVFTSFTSF
CCCCCCCCCEEEEEECCCCEEECCCCCHHHHHHHHHHCCHHHHHCCCCCCEEEHHHHHHH
YAVRNALEAAGFKGDDAEIVMQPTTSAELDLEGAEKVLKLIDMLEDLDDVQNVYSNADIP
HHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
EDVAAQLG
HHHHHHCC
>Mature Secondary Structure 
AGHSKWANIKHRKERQDAKRGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGAN
CCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHCCC
MSRDIIDRAVARGAGATEADNVEELTYEGYGPGGVAVMVECMTDNRNRTAAAVRHAFSKC
CHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
GGNLGTDGSVAYLFERKGQISFAPGVDEDALTEAALEADADDVVSHEDGSIDVFTSFTSF
CCCCCCCCCEEEEEECCCCEEECCCCCHHHHHHHHHHCCHHHHHCCCCCCEEEHHHHHHH
YAVRNALEAAGFKGDDAEIVMQPTTSAELDLEGAEKVLKLIDMLEDLDDVQNVYSNADIP
HHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
EDVAAQLG
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA