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The map label for this gene is fecI [H]

Identifier: 77460566

GI number: 77460566

Start: 4899411

End: 4899956

Strand: Reverse

Name: fecI [H]

Synonym: Pfl01_4345

Alternate gene names: 77460566

Gene position: 4899956-4899411 (Counterclockwise)

Preceding gene: 77460567

Following gene: 77460565

Centisome position: 76.11

GC content: 62.82

Gene sequence:

>546_bases
ATGTCCGGCGCCGACTCATCCCATCGCAATCATGTGAACACGTTGTTTCGCGACCATTACCAGTGGTTGTGCACACGTCT
GCGTCGGCAATCGAATGATGCGGCCACGGCCGAAGACATCGCCGCCGAAACCTTCGCGCAGCTGCTCGAAACCCCCGGCC
TGACCGCCATCCGCGAACCCCGCGCCTTGCTCACCACCATCGCCCAACGCCTGCTGTACGAGCGCTGGCGGCGGGGCGAT
CTGGAGCGTCGGCATCTGCATCAATTGCAACAGGGCGACCTCGATCACCCCCCGTCTCCTGAAGAGCTCGCCGACCTGTC
GCAGAGTCTCAAACACCTGGATCGGACGCTCCAGCGCCTGCCGGGCAAGGTGCGCTCGACCTTTCTGCTGGCGCGCATCG
ACGGCCTGACCTACCCGCAAATCGCTGCCGAACTGGGCATCTCCCAGCGTTCGGTGAGCCAGTACATGACCCGTTCCCAG
GCTCTGTGCAATCGCCACAGCGCCAACCAAACCCTGATTTCCTCCCAGAACAAGAGGTTCGCATGA

Upstream 100 bases:

>100_bases
TATAAAAATTCTTTTTAAGTATTTTTAACGCATAAGGCACCTTGCTAGGATCGCGCCACCGGACGACCGGACATTCAGCG
ACCCTTGACCAAGGAGCCCC

Downstream 100 bases:

>100_bases
GATCGCTCAAAACCCTGCTCGGCAGTTCGCTGCTGGCCCTGACCCTGACGGCCGGCCACGTGGTGGCAGCGGAAAAAACC
GCGCCGATCCACTTCGGCGA

Product: sigma-24 (FecI)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 180

Protein sequence:

>181_residues
MSGADSSHRNHVNTLFRDHYQWLCTRLRRQSNDAATAEDIAAETFAQLLETPGLTAIREPRALLTTIAQRLLYERWRRGD
LERRHLHQLQQGDLDHPPSPEELADLSQSLKHLDRTLQRLPGKVRSTFLLARIDGLTYPQIAAELGISQRSVSQYMTRSQ
ALCNRHSANQTLISSQNKRFA

Sequences:

>Translated_181_residues
MSGADSSHRNHVNTLFRDHYQWLCTRLRRQSNDAATAEDIAAETFAQLLETPGLTAIREPRALLTTIAQRLLYERWRRGD
LERRHLHQLQQGDLDHPPSPEELADLSQSLKHLDRTLQRLPGKVRSTFLLARIDGLTYPQIAAELGISQRSVSQYMTRSQ
ALCNRHSANQTLISSQNKRFA
>Mature_180_residues
SGADSSHRNHVNTLFRDHYQWLCTRLRRQSNDAATAEDIAAETFAQLLETPGLTAIREPRALLTTIAQRLLYERWRRGDL
ERRHLHQLQQGDLDHPPSPEELADLSQSLKHLDRTLQRLPGKVRSTFLLARIDGLTYPQIAAELGISQRSVSQYMTRSQA
LCNRHSANQTLISSQNKRFA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates the fec genes for iron dicitrate transport (Probable) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790746, Length=151, Percent_Identity=39.0728476821192, Blast_Score=112, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 20722; Mature: 20590

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGADSSHRNHVNTLFRDHYQWLCTRLRRQSNDAATAEDIAAETFAQLLETPGLTAIREP
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHCH
RALLTTIAQRLLYERWRRGDLERRHLHQLQQGDLDHPPSPEELADLSQSLKHLDRTLQRL
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
PGKVRSTFLLARIDGLTYPQIAAELGISQRSVSQYMTRSQALCNRHSANQTLISSQNKRF
CHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCC
A
C
>Mature Secondary Structure 
SGADSSHRNHVNTLFRDHYQWLCTRLRRQSNDAATAEDIAAETFAQLLETPGLTAIREP
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHCH
RALLTTIAQRLLYERWRRGDLERRHLHQLQQGDLDHPPSPEELADLSQSLKHLDRTLQRL
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
PGKVRSTFLLARIDGLTYPQIAAELGISQRSVSQYMTRSQALCNRHSANQTLISSQNKRF
CHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCC
A
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2254251; 7610040; 9278503; 8052622 [H]