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The map label for this gene is ycdC [C]

Identifier: 77460527

GI number: 77460527

Start: 4863367

End: 4863975

Strand: Direct

Name: ycdC [C]

Synonym: Pfl01_4306

Alternate gene names: 77460527

Gene position: 4863367-4863975 (Clockwise)

Preceding gene: 77460524

Following gene: 77460528

Centisome position: 75.54

GC content: 58.95

Gene sequence:

>609_bases
ATGACAGCTCCCCAGCGCCTCACCGACCGAAAACGCGAAGCCATCATCCAGGCCGCGATCACCGAATTTCGTACCAACGG
TTTCGAGGTCACCAGCATGGACAAGATTGCGGCCACTGCCGGGGTGTCGAAGCGTACGGTGTACAACCATTTTCCGAGCA
AGGAAGAGCTGTTCGCCGAAATTCTCAACCAGTTGTGGGCACGGATCAGCACCGAGCAAACCGTCTCGTATCAGCCCGAT
CAGCCATTGCGCGATCAATTGCGAACCATGCTGCTGGCCAAACTGCAGATGATGGCGGACGACAATTTCATGAATCTGGC
CCGCGTTGCCATCGCGGCGGCGATCCATTCGCCGGAGCGCGCGCAGAACATGGTGGCGCGCATGGGCGAACGTGAGGAAA
GCGTGACTGTGTGGATTCGCGCCGCCCAGGCGGATGGTCGATTGAAACCGGTCGATCCGGCGTTCGCCGCCCATCAAGTG
CAAGGGCTGCTGAAAACCTTTGCCTTCTGGCCACAAATCTCCCTGGGCCAACCCTCGCTCGACAGCACAGCGCAAAATGC
CGTGGTCGACTCTGCACTCGACATGTTCCTGACCTGCTATCAGCTCTAG

Upstream 100 bases:

>100_bases
CCCAGCATTACACTGATCGGTGTAGTTTCTAGGTTGCAACAAACCGGATGACAAGTAAACTGCCGAGTGTAATTTTACCT
TTTCCTGCCGAATCGAATTT

Downstream 100 bases:

>100_bases
CTCAGGCCTGCGCCATGGTAAATGGCTCGCAAGGACACTGAATTTTCCCGCTGGAATAAATGACAATGTCTGTCATTGGC
CGATGAACGGTCTGTCTGAA

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Transcriptional Regulator TetR Family Protein; Regulatory Protein TetR; Transcription Regulator Protein; TetR-Like Virulence Regulator; TetR Family Transcriptional Regulatory Protein; TetR-Type Transcriptional Regulator; Transcription Regulator Protein Tetr Family; TetR Family Regulatory Protein; Transcriptional Regulator TetR; Transcriptional Regulator Protein Tetr Family

Number of amino acids: Translated: 202; Mature: 201

Protein sequence:

>202_residues
MTAPQRLTDRKREAIIQAAITEFRTNGFEVTSMDKIAATAGVSKRTVYNHFPSKEELFAEILNQLWARISTEQTVSYQPD
QPLRDQLRTMLLAKLQMMADDNFMNLARVAIAAAIHSPERAQNMVARMGEREESVTVWIRAAQADGRLKPVDPAFAAHQV
QGLLKTFAFWPQISLGQPSLDSTAQNAVVDSALDMFLTCYQL

Sequences:

>Translated_202_residues
MTAPQRLTDRKREAIIQAAITEFRTNGFEVTSMDKIAATAGVSKRTVYNHFPSKEELFAEILNQLWARISTEQTVSYQPD
QPLRDQLRTMLLAKLQMMADDNFMNLARVAIAAAIHSPERAQNMVARMGEREESVTVWIRAAQADGRLKPVDPAFAAHQV
QGLLKTFAFWPQISLGQPSLDSTAQNAVVDSALDMFLTCYQL
>Mature_201_residues
TAPQRLTDRKREAIIQAAITEFRTNGFEVTSMDKIAATAGVSKRTVYNHFPSKEELFAEILNQLWARISTEQTVSYQPDQ
PLRDQLRTMLLAKLQMMADDNFMNLARVAIAAAIHSPERAQNMVARMGEREESVTVWIRAAQADGRLKPVDPAFAAHQVQ
GLLKTFAFWPQISLGQPSLDSTAQNAVVDSALDMFLTCYQL

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22643; Mature: 22512

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAPQRLTDRKREAIIQAAITEFRTNGFEVTSMDKIAATAGVSKRTVYNHFPSKEELFAE
CCCCHHHHHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHHCCHHHHHHHCCCCHHHHHHH
ILNQLWARISTEQTVSYQPDQPLRDQLRTMLLAKLQMMADDNFMNLARVAIAAAIHSPER
HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHH
AQNMVARMGEREESVTVWIRAAQADGRLKPVDPAFAAHQVQGLLKTFAFWPQISLGQPSL
HHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
DSTAQNAVVDSALDMFLTCYQL
CHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TAPQRLTDRKREAIIQAAITEFRTNGFEVTSMDKIAATAGVSKRTVYNHFPSKEELFAE
CCCHHHHHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHHCCHHHHHHHCCCCHHHHHHH
ILNQLWARISTEQTVSYQPDQPLRDQLRTMLLAKLQMMADDNFMNLARVAIAAAIHSPER
HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHH
AQNMVARMGEREESVTVWIRAAQADGRLKPVDPAFAAHQVQGLLKTFAFWPQISLGQPSL
HHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
DSTAQNAVVDSALDMFLTCYQL
CHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA