| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is 77460364
Identifier: 77460364
GI number: 77460364
Start: 4682453
End: 4683328
Strand: Reverse
Name: 77460364
Synonym: Pfl01_4143
Alternate gene names: NA
Gene position: 4683328-4682453 (Counterclockwise)
Preceding gene: 77460365
Following gene: 77460363
Centisome position: 72.74
GC content: 63.36
Gene sequence:
>876_bases ATGACGTGGACTGCGGTGACAGAGCATCGGGCGCAACTGGGCGAGGGCCCGTTCTGGGACGCACTGACCCAGGCACTGTA CTGGGTCGACATTGCCGGCAGGCAGGCGCTGCGGCTGATCGGGCAGAACGTGCAGATCTGGCAGATGCCGGAGCACGTCT CGGCGTTCATTCCCTGCGCCAGCGGCGACGCACTGGTGACCCTGAGCAGCGGCGTATACCGGCTCGATCTCGATTCCCCC GGACTCGAGCCGCGACTGACGCTGTTCTGCATCGCCGATCCGCAACCGGGCAATCGCGCCAACGAAGCACGTTGTGATGG CCAGGGCCGTTTGTGGCTCGGCACCATGCAAAACAACATTGGCGAGCAGGGCGAGGATCTGCCGATCATCCGTCGTTCCG GCGGGCTGTTCCGGATTGATCCGGATAAAAGGGTCACACCCTTGTTACGGGGGCTGGGCATTCCCAACACGCTGCTCTGG AGCGACGACGGCACCACGCTGCTGTTCGGCGACAGCCTCGACAGCACTTTGTACCGCTATTTCATTCACACCGACGGCAA CCTCGACACTGCCCAGCCCTGGTACAGCGCCGATCAGCACGGTGGCCCGGACGGTTCGGCGATGGACGCCGAAGGCTACG TCTGGAACGCCCGCTGGGACGGCAGCTGCCTGCTGCGCCTGACACCGGATGGCCAGATCGACCGCAGGATCGAACTGCCA ATCAGCCGCCCGACCAGTTGCGTATTCGGCGGCACAGACCTGAAAACCTTGTACATCACCAGCGCCAAAAGTCCGCTGAA CCATCCGTTGGACGGCGCCGTGCTGTCCCTGCAGGTGGATGTCGCCGGAAAGCTCTGTACTCGATTCGCTGGTTAA
Upstream 100 bases:
>100_bases ACCCTGATCGACAATGCCAACCTGGCCATCAAGCGGTTCTACCCGCAGGTGATGGCCGACAAGAAAGCCAGCTGACAAAA ACAACAAAACAGGAGGTTGC
Downstream 100 bases:
>100_bases ATCCCAAAATATGGGATGCAAAATTATATATTGAGATTATTTGGCGGTCGGGTTTATAGTCGGCTCCAGCAGTAACACGC ACTCACACTTAAAAAGAACA
Product: gluconolactonase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 291; Mature: 290
Protein sequence:
>291_residues MTWTAVTEHRAQLGEGPFWDALTQALYWVDIAGRQALRLIGQNVQIWQMPEHVSAFIPCASGDALVTLSSGVYRLDLDSP GLEPRLTLFCIADPQPGNRANEARCDGQGRLWLGTMQNNIGEQGEDLPIIRRSGGLFRIDPDKRVTPLLRGLGIPNTLLW SDDGTTLLFGDSLDSTLYRYFIHTDGNLDTAQPWYSADQHGGPDGSAMDAEGYVWNARWDGSCLLRLTPDGQIDRRIELP ISRPTSCVFGGTDLKTLYITSAKSPLNHPLDGAVLSLQVDVAGKLCTRFAG
Sequences:
>Translated_291_residues MTWTAVTEHRAQLGEGPFWDALTQALYWVDIAGRQALRLIGQNVQIWQMPEHVSAFIPCASGDALVTLSSGVYRLDLDSP GLEPRLTLFCIADPQPGNRANEARCDGQGRLWLGTMQNNIGEQGEDLPIIRRSGGLFRIDPDKRVTPLLRGLGIPNTLLW SDDGTTLLFGDSLDSTLYRYFIHTDGNLDTAQPWYSADQHGGPDGSAMDAEGYVWNARWDGSCLLRLTPDGQIDRRIELP ISRPTSCVFGGTDLKTLYITSAKSPLNHPLDGAVLSLQVDVAGKLCTRFAG >Mature_290_residues TWTAVTEHRAQLGEGPFWDALTQALYWVDIAGRQALRLIGQNVQIWQMPEHVSAFIPCASGDALVTLSSGVYRLDLDSPG LEPRLTLFCIADPQPGNRANEARCDGQGRLWLGTMQNNIGEQGEDLPIIRRSGGLFRIDPDKRVTPLLRGLGIPNTLLWS DDGTTLLFGDSLDSTLYRYFIHTDGNLDTAQPWYSADQHGGPDGSAMDAEGYVWNARWDGSCLLRLTPDGQIDRRIELPI SRPTSCVFGGTDLKTLYITSAKSPLNHPLDGAVLSLQVDVAGKLCTRFAG
Specific function: Unknown
COG id: COG3386
COG function: function code G; Gluconolactonase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the SMP-30/CGR1 family [H]
Homologues:
Organism=Homo sapiens, GI23111021, Length=269, Percent_Identity=27.5092936802974, Blast_Score=108, Evalue=8e-24, Organism=Homo sapiens, GI4759036, Length=269, Percent_Identity=27.5092936802974, Blast_Score=108, Evalue=8e-24, Organism=Drosophila melanogaster, GI45551448, Length=267, Percent_Identity=29.2134831460674, Blast_Score=101, Evalue=5e-22, Organism=Drosophila melanogaster, GI24641471, Length=267, Percent_Identity=29.2134831460674, Blast_Score=101, Evalue=6e-22, Organism=Drosophila melanogaster, GI18860103, Length=267, Percent_Identity=29.2134831460674, Blast_Score=101, Evalue=6e-22, Organism=Drosophila melanogaster, GI24641469, Length=267, Percent_Identity=29.2134831460674, Blast_Score=101, Evalue=6e-22, Organism=Drosophila melanogaster, GI24646912, Length=275, Percent_Identity=25.8181818181818, Blast_Score=82, Evalue=5e-16, Organism=Drosophila melanogaster, GI24646910, Length=275, Percent_Identity=25.8181818181818, Blast_Score=82, Evalue=5e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011042 - InterPro: IPR013658 - InterPro: IPR005511 [H]
Pfam domain/function: PF08450 SGL [H]
EC number: NA
Molecular weight: Translated: 31925; Mature: 31794
Theoretical pI: Translated: 4.72; Mature: 4.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTWTAVTEHRAQLGEGPFWDALTQALYWVDIAGRQALRLIGQNVQIWQMPEHVSAFIPCA CCCCCCHHHHHHCCCCCCHHHHHHHEEEEECCCHHHHHHHCCCCEEEECCCHHEEEEECC SGDALVTLSSGVYRLDLDSPGLEPRLTLFCIADPQPGNRANEARCDGQGRLWLGTMQNNI CCCEEEEECCCEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCEECCCCCEEEEEHHCCC GEQGEDLPIIRRSGGLFRIDPDKRVTPLLRGLGIPNTLLWSDDGTTLLFGDSLDSTLYRY CCCCCCCCEEEECCCEEEECCCCHHHHHHHHCCCCCEEEECCCCCEEEECCCCCCCEEEE FIHTDGNLDTAQPWYSADQHGGPDGSAMDAEGYVWNARWDGSCLLRLTPDGQIDRRIELP EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEEECCCCCCCEEEECC ISRPTSCVFGGTDLKTLYITSAKSPLNHPLDGAVLSLQVDVAGKLCTRFAG CCCCCEEEECCCCEEEEEEEECCCCCCCCCCCEEEEEEEEHHHHHHHHCCC >Mature Secondary Structure TWTAVTEHRAQLGEGPFWDALTQALYWVDIAGRQALRLIGQNVQIWQMPEHVSAFIPCA CCCCCHHHHHHCCCCCCHHHHHHHEEEEECCCHHHHHHHCCCCEEEECCCHHEEEEECC SGDALVTLSSGVYRLDLDSPGLEPRLTLFCIADPQPGNRANEARCDGQGRLWLGTMQNNI CCCEEEEECCCEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCEECCCCCEEEEEHHCCC GEQGEDLPIIRRSGGLFRIDPDKRVTPLLRGLGIPNTLLWSDDGTTLLFGDSLDSTLYRY CCCCCCCCEEEECCCEEEECCCCHHHHHHHHCCCCCEEEECCCCCEEEECCCCCCCEEEE FIHTDGNLDTAQPWYSADQHGGPDGSAMDAEGYVWNARWDGSCLLRLTPDGQIDRRIELP EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEEECCCCCCCEEEECC ISRPTSCVFGGTDLKTLYITSAKSPLNHPLDGAVLSLQVDVAGKLCTRFAG CCCCCEEEECCCCEEEEEEEECCCCCCCCCCCEEEEEEEEHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA