| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is ucpA [H]
Identifier: 77460363
GI number: 77460363
Start: 4681364
End: 4682182
Strand: Reverse
Name: ucpA [H]
Synonym: Pfl01_4142
Alternate gene names: 77460363
Gene position: 4682182-4681364 (Counterclockwise)
Preceding gene: 77460364
Following gene: 77460362
Centisome position: 72.72
GC content: 60.93
Gene sequence:
>819_bases ATGGCTGAACCTCTGTCCCTGCCACCGGTGCCCGAGCCACCAAAAGGCGAGCGTCTGAAAAACAAGGTTGTGTTGCTGAC CGGCGCCGCCCAAGGCATCGGCGAAGCAATCGTCGCGACCTTCGCCTCCCAGCAGGCCAAACTGGTGATCAGCGATATCC AGGCCGAAAAGGTCGAGAAAGTCGCCGCCCACTGGCGCGAGCAGGGCGCCGATGTGCAAGCGATCAAGGCCGACGTATCG CGTCAGCAGGATCTGCACGCCATGGCCAAACTGGCCATCGAACTGCACGGGCGCATCGACGTGCTGGTCAATTGCGCCGG GGTCAACGTGTTCCGTGATCCGCTGGAAATGACCGAAGAAGACTGGAAACGCTGCTTCGCGATCGACCTCGACGGCGCCT GGTATGGCTGCAAGGCCGTATTGCCGCAGATGATCGAGCAGGGCATCGGCAGCATCATCAACATTGCCTCGACCCATTCC ACGAACATCATTCCCGGCTGCTTCCCGTACCCGGTGGCCAAGCATGGCCTGCTCGGCCTGACCCGCGCGCTGGGCATCGA GTACGCGCCGAAGGGTATTCGGGTCAACGCGATTGCACCGGGCTACATCGAAACCCAGCTCAACGTCGATTACTGGAACG GTTTCGCCGACCCGCACGCCGAACGTCAGCGCGCTTTCGATCTGCACCCACCGAAACGCATCGGCCAACCGATCGAAGTG GCAATGACTGCTGTATTCCTGGCCAGTGATGAAGCGCCGTTCATCAACGCCTCGTGCATCACTATCGATGGTGGTCGCTC GGTCATGTACCACGACTGA
Upstream 100 bases:
>100_bases TGCCGCGGCATGCGCGCGCCTGTTTTGTTCCACAAGCCTTCCAGACCGGACATCGTCAGATGCCCGGTTTTTTTATGCTT TCGAACAGGAGTCCTGATTC
Downstream 100 bases:
>100_bases CAAAAGCGGGTTTCAGGTGGAAAGGTTCGCCTGAAATCCAATCATCATACGATATGACTATTGTCGTCATGATTAGCAGG AACGCTTCGACCGCTTTAAC
Product: short chain dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 272; Mature: 271
Protein sequence:
>272_residues MAEPLSLPPVPEPPKGERLKNKVVLLTGAAQGIGEAIVATFASQQAKLVISDIQAEKVEKVAAHWREQGADVQAIKADVS RQQDLHAMAKLAIELHGRIDVLVNCAGVNVFRDPLEMTEEDWKRCFAIDLDGAWYGCKAVLPQMIEQGIGSIINIASTHS TNIIPGCFPYPVAKHGLLGLTRALGIEYAPKGIRVNAIAPGYIETQLNVDYWNGFADPHAERQRAFDLHPPKRIGQPIEV AMTAVFLASDEAPFINASCITIDGGRSVMYHD
Sequences:
>Translated_272_residues MAEPLSLPPVPEPPKGERLKNKVVLLTGAAQGIGEAIVATFASQQAKLVISDIQAEKVEKVAAHWREQGADVQAIKADVS RQQDLHAMAKLAIELHGRIDVLVNCAGVNVFRDPLEMTEEDWKRCFAIDLDGAWYGCKAVLPQMIEQGIGSIINIASTHS TNIIPGCFPYPVAKHGLLGLTRALGIEYAPKGIRVNAIAPGYIETQLNVDYWNGFADPHAERQRAFDLHPPKRIGQPIEV AMTAVFLASDEAPFINASCITIDGGRSVMYHD >Mature_271_residues AEPLSLPPVPEPPKGERLKNKVVLLTGAAQGIGEAIVATFASQQAKLVISDIQAEKVEKVAAHWREQGADVQAIKADVSR QQDLHAMAKLAIELHGRIDVLVNCAGVNVFRDPLEMTEEDWKRCFAIDLDGAWYGCKAVLPQMIEQGIGSIINIASTHST NIIPGCFPYPVAKHGLLGLTRALGIEYAPKGIRVNAIAPGYIETQLNVDYWNGFADPHAERQRAFDLHPPKRIGQPIEVA MTAVFLASDEAPFINASCITIDGGRSVMYHD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=248, Percent_Identity=35.0806451612903, Blast_Score=149, Evalue=2e-36, Organism=Homo sapiens, GI19923817, Length=265, Percent_Identity=30.5660377358491, Blast_Score=133, Evalue=1e-31, Organism=Homo sapiens, GI126723750, Length=251, Percent_Identity=31.4741035856574, Blast_Score=123, Evalue=1e-28, Organism=Homo sapiens, GI40254992, Length=248, Percent_Identity=33.8709677419355, Blast_Score=120, Evalue=1e-27, Organism=Homo sapiens, GI5031737, Length=253, Percent_Identity=31.6205533596838, Blast_Score=119, Evalue=4e-27, Organism=Homo sapiens, GI126723191, Length=181, Percent_Identity=36.4640883977901, Blast_Score=118, Evalue=5e-27, Organism=Homo sapiens, GI66933014, Length=253, Percent_Identity=31.2252964426877, Blast_Score=112, Evalue=3e-25, Organism=Homo sapiens, GI33667109, Length=198, Percent_Identity=33.8383838383838, Blast_Score=104, Evalue=7e-23, Organism=Homo sapiens, GI15277342, Length=258, Percent_Identity=28.2945736434109, Blast_Score=103, Evalue=2e-22, Organism=Homo sapiens, GI210032110, Length=196, Percent_Identity=29.5918367346939, Blast_Score=98, Evalue=8e-21, Organism=Homo sapiens, GI59889578, Length=234, Percent_Identity=30.3418803418803, Blast_Score=95, Evalue=7e-20, Organism=Homo sapiens, GI142976729, Length=196, Percent_Identity=28.0612244897959, Blast_Score=93, Evalue=2e-19, Organism=Homo sapiens, GI4758504, Length=258, Percent_Identity=31.7829457364341, Blast_Score=93, Evalue=2e-19, Organism=Homo sapiens, GI10190704, Length=248, Percent_Identity=27.0161290322581, Blast_Score=92, Evalue=5e-19, Organism=Homo sapiens, GI31542939, Length=266, Percent_Identity=28.9473684210526, Blast_Score=89, Evalue=3e-18, Organism=Homo sapiens, GI4504505, Length=192, Percent_Identity=32.2916666666667, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI302344755, Length=109, Percent_Identity=41.2844036697248, Blast_Score=86, Evalue=4e-17, Organism=Homo sapiens, GI7705925, Length=249, Percent_Identity=27.710843373494, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI40807363, Length=211, Percent_Identity=26.5402843601896, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI7706318, Length=194, Percent_Identity=28.3505154639175, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI20149619, Length=198, Percent_Identity=29.7979797979798, Blast_Score=79, Evalue=6e-15, Organism=Homo sapiens, GI83715985, Length=258, Percent_Identity=29.4573643410853, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI109715829, Length=247, Percent_Identity=25.9109311740891, Blast_Score=75, Evalue=8e-14, Organism=Homo sapiens, GI25282469, Length=222, Percent_Identity=25.2252252252252, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI4503301, Length=234, Percent_Identity=26.0683760683761, Blast_Score=72, Evalue=7e-13, Organism=Homo sapiens, GI224922801, Length=176, Percent_Identity=32.3863636363636, Blast_Score=72, Evalue=8e-13, Organism=Homo sapiens, GI210032112, Length=196, Percent_Identity=26.0204081632653, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI4503817, Length=192, Percent_Identity=27.0833333333333, Blast_Score=66, Evalue=4e-11, Organism=Escherichia coli, GI87082100, Length=254, Percent_Identity=38.5826771653543, Blast_Score=162, Evalue=2e-41, Organism=Escherichia coli, GI1787905, Length=248, Percent_Identity=33.0645161290323, Blast_Score=127, Evalue=9e-31, Organism=Escherichia coli, GI1787335, Length=256, Percent_Identity=32.8125, Blast_Score=121, Evalue=4e-29, Organism=Escherichia coli, GI1790717, Length=250, Percent_Identity=31.2, Blast_Score=119, Evalue=2e-28, Organism=Escherichia coli, GI1789208, Length=253, Percent_Identity=32.4110671936759, Blast_Score=114, Evalue=7e-27, Organism=Escherichia coli, GI1788459, Length=251, Percent_Identity=33.0677290836653, Blast_Score=110, Evalue=9e-26, Organism=Escherichia coli, GI1786812, Length=255, Percent_Identity=29.4117647058824, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI87082160, Length=250, Percent_Identity=29.2, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI2367365, Length=247, Percent_Identity=31.5789473684211, Blast_Score=98, Evalue=6e-22, Organism=Escherichia coli, GI1789378, Length=253, Percent_Identity=29.2490118577075, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI2367175, Length=252, Percent_Identity=29.7619047619048, Blast_Score=88, Evalue=6e-19, Organism=Escherichia coli, GI1789057, Length=266, Percent_Identity=25.9398496240602, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1787820, Length=183, Percent_Identity=30.6010928961749, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1787526, Length=245, Percent_Identity=23.6734693877551, Blast_Score=66, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17561402, Length=255, Percent_Identity=31.7647058823529, Blast_Score=132, Evalue=3e-31, Organism=Caenorhabditis elegans, GI17560676, Length=254, Percent_Identity=28.3464566929134, Blast_Score=123, Evalue=1e-28, Organism=Caenorhabditis elegans, GI17555706, Length=252, Percent_Identity=27.7777777777778, Blast_Score=109, Evalue=1e-24, Organism=Caenorhabditis elegans, GI71994600, Length=252, Percent_Identity=27.3809523809524, Blast_Score=107, Evalue=5e-24, Organism=Caenorhabditis elegans, GI71994604, Length=251, Percent_Identity=26.6932270916335, Blast_Score=101, Evalue=4e-22, Organism=Caenorhabditis elegans, GI17536651, Length=275, Percent_Identity=28.7272727272727, Blast_Score=100, Evalue=6e-22, Organism=Caenorhabditis elegans, GI17544670, Length=271, Percent_Identity=29.8892988929889, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI25147288, Length=252, Percent_Identity=27.3809523809524, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI193204405, Length=267, Percent_Identity=30.3370786516854, Blast_Score=99, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17562904, Length=269, Percent_Identity=27.8810408921933, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17564282, Length=194, Percent_Identity=27.319587628866, Blast_Score=94, Evalue=7e-20, Organism=Caenorhabditis elegans, GI115534694, Length=255, Percent_Identity=28.2352941176471, Blast_Score=94, Evalue=7e-20, Organism=Caenorhabditis elegans, GI17536025, Length=257, Percent_Identity=28.7937743190661, Blast_Score=94, Evalue=8e-20, Organism=Caenorhabditis elegans, GI17562910, Length=272, Percent_Identity=26.8382352941176, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI193203117, Length=192, Percent_Identity=27.0833333333333, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI193203115, Length=191, Percent_Identity=27.2251308900524, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17563726, Length=266, Percent_Identity=25.9398496240602, Blast_Score=87, Evalue=6e-18, Organism=Caenorhabditis elegans, GI17559104, Length=270, Percent_Identity=27.037037037037, Blast_Score=87, Evalue=6e-18, Organism=Caenorhabditis elegans, GI17560332, Length=269, Percent_Identity=25.6505576208178, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17508895, Length=209, Percent_Identity=25.8373205741627, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17562908, Length=274, Percent_Identity=25.1824817518248, Blast_Score=84, Evalue=7e-17, Organism=Caenorhabditis elegans, GI17538486, Length=271, Percent_Identity=25.830258302583, Blast_Score=84, Evalue=8e-17, Organism=Caenorhabditis elegans, GI17568967, Length=194, Percent_Identity=30.9278350515464, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17538480, Length=268, Percent_Identity=25.3731343283582, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17551412, Length=269, Percent_Identity=24.907063197026, Blast_Score=81, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17562906, Length=268, Percent_Identity=25, Blast_Score=81, Evalue=5e-16, Organism=Caenorhabditis elegans, GI17565030, Length=267, Percent_Identity=25.4681647940075, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI17560150, Length=267, Percent_Identity=24.7191011235955, Blast_Score=80, Evalue=9e-16, Organism=Caenorhabditis elegans, GI17561272, Length=258, Percent_Identity=30.2325581395349, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17562990, Length=267, Percent_Identity=24.7191011235955, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI72000259, Length=271, Percent_Identity=25.830258302583, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17560220, Length=272, Percent_Identity=26.1029411764706, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17508651, Length=255, Percent_Identity=26.6666666666667, Blast_Score=72, Evalue=3e-13, Organism=Saccharomyces cerevisiae, GI6324126, Length=257, Percent_Identity=26.4591439688716, Blast_Score=86, Evalue=8e-18, Organism=Saccharomyces cerevisiae, GI6322861, Length=198, Percent_Identity=31.8181818181818, Blast_Score=83, Evalue=4e-17, Organism=Saccharomyces cerevisiae, GI6323882, Length=205, Percent_Identity=27.3170731707317, Blast_Score=74, Evalue=3e-14, Organism=Drosophila melanogaster, GI23397609, Length=250, Percent_Identity=33.6, Blast_Score=132, Evalue=3e-31, Organism=Drosophila melanogaster, GI21357041, Length=255, Percent_Identity=32.156862745098, Blast_Score=122, Evalue=2e-28, Organism=Drosophila melanogaster, GI24644339, Length=255, Percent_Identity=32.5490196078431, Blast_Score=120, Evalue=7e-28, Organism=Drosophila melanogaster, GI21355319, Length=250, Percent_Identity=30, Blast_Score=118, Evalue=5e-27, Organism=Drosophila melanogaster, GI28571526, Length=256, Percent_Identity=30.859375, Blast_Score=111, Evalue=5e-25, Organism=Drosophila melanogaster, GI24643142, Length=251, Percent_Identity=29.8804780876494, Blast_Score=106, Evalue=1e-23, Organism=Drosophila melanogaster, GI24639444, Length=252, Percent_Identity=31.3492063492063, Blast_Score=106, Evalue=2e-23, Organism=Drosophila melanogaster, GI24644337, Length=261, Percent_Identity=31.4176245210728, Blast_Score=95, Evalue=6e-20, Organism=Drosophila melanogaster, GI17737361, Length=269, Percent_Identity=29.7397769516729, Blast_Score=94, Evalue=8e-20, Organism=Drosophila melanogaster, GI21358495, Length=229, Percent_Identity=24.0174672489083, Blast_Score=90, Evalue=2e-18, Organism=Drosophila melanogaster, GI18859837, Length=192, Percent_Identity=29.6875, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI24581726, Length=200, Percent_Identity=27.5, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI281364892, Length=236, Percent_Identity=27.5423728813559, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI24640492, Length=198, Percent_Identity=26.2626262626263, Blast_Score=74, Evalue=8e-14, Organism=Drosophila melanogaster, GI24649181, Length=205, Percent_Identity=26.8292682926829, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI161076933, Length=214, Percent_Identity=27.5700934579439, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI24584748, Length=214, Percent_Identity=27.5700934579439, Blast_Score=69, Evalue=4e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 29579; Mature: 29448
Theoretical pI: Translated: 5.85; Mature: 5.85
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEPLSLPPVPEPPKGERLKNKVVLLTGAAQGIGEAIVATFASQQAKLVISDIQAEKVEK CCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHH VAAHWREQGADVQAIKADVSRQQDLHAMAKLAIELHGRIDVLVNCAGVNVFRDPLEMTEE HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHCHHHHCHH DWKRCFAIDLDGAWYGCKAVLPQMIEQGIGSIINIASTHSTNIIPGCFPYPVAKHGLLGL HHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHEEHHCCCCCCCCCCCCCCCHHHHHHHHH TRALGIEYAPKGIRVNAIAPGYIETQLNVDYWNGFADPHAERQRAFDLHPPKRIGQPIEV HHHHCCEECCCCEEEEEECCCEEEEEEEEHHCCCCCCCCHHHHHCCCCCCHHHHCCHHHH AMTAVFLASDEAPFINASCITIDGGRSVMYHD HHHHHEEECCCCCEEEEEEEEEECCCEEEECC >Mature Secondary Structure AEPLSLPPVPEPPKGERLKNKVVLLTGAAQGIGEAIVATFASQQAKLVISDIQAEKVEK CCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHH VAAHWREQGADVQAIKADVSRQQDLHAMAKLAIELHGRIDVLVNCAGVNVFRDPLEMTEE HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHCHHHHCHH DWKRCFAIDLDGAWYGCKAVLPQMIEQGIGSIINIASTHSTNIIPGCFPYPVAKHGLLGL HHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHEEHHCCCCCCCCCCCCCCCHHHHHHHHH TRALGIEYAPKGIRVNAIAPGYIETQLNVDYWNGFADPHAERQRAFDLHPPKRIGQPIEV HHHHCCEECCCCEEEEEECCCEEEEEEEEHHCCCCCCCCHHHHHCCCCCCHHHHCCHHHH AMTAVFLASDEAPFINASCITIDGGRSVMYHD HHHHHEEECCCCCEEEEEEEEEECCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]