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The map label for this gene is araH [H]

Identifier: 77460360

GI number: 77460360

Start: 4677634

End: 4678602

Strand: Reverse

Name: araH [H]

Synonym: Pfl01_4139

Alternate gene names: 77460360

Gene position: 4678602-4677634 (Counterclockwise)

Preceding gene: 77460361

Following gene: 77460359

Centisome position: 72.67

GC content: 58.82

Gene sequence:

>969_bases
ATGACAACCCAAAACGAAACCCTGCCGACCGAGCGCAAACCTCTGGATATGCGGCGCTTCCTTGATGACTGGGTGATGCT
GCTGGCGGCGGTGGGCATTTTTGTCGCCTGCACCTTGCTGATCGACAACTTCCTTTCGCCACTGAACATGCGTGGCCTGG
GCCTGGCAATTTCCACCACCGGGATCGCTGCGTGCACCATGTTGTACTGCCTGGCGTCGGGGCATTTCGACTTGTCGGTG
GGTTCGGTGATTGCCTGCGCCGGCGTGGTTGCGGCGGTGGTGATGCGCGACACCAACAGCGTGTTTCTCGGCGTCAGCGC
GGCGCTGGTGATGGGCCTGATCGTCGGCCTGATCAACGGCATCGTGATCGCCAAGTTGCGGGTCAATGCGCTGATCACGA
CACTGGCGACCATGCAGATCGTCCGTGGCCTGGCCTACATTTTTGCCAACGGCAAAGCGGTGGGCGTATCGCAGGAATCG
TTCTTCGTGTTCGGCAACGGCCAGTTGTTCGGCGTGCCGGTGCCGATTCTGATCACCATCGTCTGCTTCCTGTTTTTCGG
CTGGTTGCTGAACTACACGACCTACGGGCGCAACACCATGGCCATCGGCGGCAACCAGGAAGCGGCGCTGCTGGCGGGGG
TGAATGTCGATCGCACGAAGATCATCATTTTCGCGGTGCATGGGGTGATTGGTGCACTGGCGGGGGTGATTCTGGCGTCG
CGGATGACTTCGGGTCAGCCGATGATTGGCCAGGGTTTTGAGCTGACGGTGATTTCGGCCTGCGTGCTGGGCGGGGTGTC
GCTGAGTGGCGGGATCGGGATGATTCGGCATGTGATTGCCGGGGTCTTGATTCTGGCGATTATCGAGAATGCGATGAACC
TGAAGAATATCGACACGTTTTATCAGTATGTGATTCGTGGGTCGATTCTGCTGTTGGCTGTTGTCATTGACCGTCTGAAA
CAGCGCTGA

Upstream 100 bases:

>100_bases
TGGCGAAGTCAGCCGCGACCAGGCCAACGAATCCAACCTGCTGCAACTGGCTTTGCCGCGCCACCGCGCTGACGGCGTGG
CGAACTGAGAGGTGACTATG

Downstream 100 bases:

>100_bases
GATCAAAAGCTCCCTCACCCCCCGCCCTCTCCCGGAGGGAGAGGGAGCTGACCGAGGTGTCTTGCGCTCTACATTGACCT
GAAGAATTCAGTCGATTATG

Product: L-arabinose transporter permease

Products: ADP; phosphate; arabinose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 321

Protein sequence:

>322_residues
MTTQNETLPTERKPLDMRRFLDDWVMLLAAVGIFVACTLLIDNFLSPLNMRGLGLAISTTGIAACTMLYCLASGHFDLSV
GSVIACAGVVAAVVMRDTNSVFLGVSAALVMGLIVGLINGIVIAKLRVNALITTLATMQIVRGLAYIFANGKAVGVSQES
FFVFGNGQLFGVPVPILITIVCFLFFGWLLNYTTYGRNTMAIGGNQEAALLAGVNVDRTKIIIFAVHGVIGALAGVILAS
RMTSGQPMIGQGFELTVISACVLGGVSLSGGIGMIRHVIAGVLILAIIENAMNLKNIDTFYQYVIRGSILLLAVVIDRLK
QR

Sequences:

>Translated_322_residues
MTTQNETLPTERKPLDMRRFLDDWVMLLAAVGIFVACTLLIDNFLSPLNMRGLGLAISTTGIAACTMLYCLASGHFDLSV
GSVIACAGVVAAVVMRDTNSVFLGVSAALVMGLIVGLINGIVIAKLRVNALITTLATMQIVRGLAYIFANGKAVGVSQES
FFVFGNGQLFGVPVPILITIVCFLFFGWLLNYTTYGRNTMAIGGNQEAALLAGVNVDRTKIIIFAVHGVIGALAGVILAS
RMTSGQPMIGQGFELTVISACVLGGVSLSGGIGMIRHVIAGVLILAIIENAMNLKNIDTFYQYVIRGSILLLAVVIDRLK
QR
>Mature_321_residues
TTQNETLPTERKPLDMRRFLDDWVMLLAAVGIFVACTLLIDNFLSPLNMRGLGLAISTTGIAACTMLYCLASGHFDLSVG
SVIACAGVVAAVVMRDTNSVFLGVSAALVMGLIVGLINGIVIAKLRVNALITTLATMQIVRGLAYIFANGKAVGVSQESF
FVFGNGQLFGVPVPILITIVCFLFFGWLLNYTTYGRNTMAIGGNQEAALLAGVNVDRTKIIIFAVHGVIGALAGVILASR
MTSGQPMIGQGFELTVISACVLGGVSLSGGIGMIRHVIAGVLILAIIENAMNLKNIDTFYQYVIRGSILLLAVVIDRLKQ
R

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693152, Length=312, Percent_Identity=61.5384615384615, Blast_Score=370, Evalue=1e-104,
Organism=Escherichia coli, GI1790191, Length=312, Percent_Identity=36.8589743589744, Blast_Score=179, Evalue=2e-46,
Organism=Escherichia coli, GI1788896, Length=327, Percent_Identity=32.4159021406728, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1789992, Length=378, Percent_Identity=33.0687830687831, Blast_Score=149, Evalue=3e-37,
Organism=Escherichia coli, GI1790524, Length=327, Percent_Identity=29.9694189602446, Blast_Score=147, Evalue=8e-37,
Organism=Escherichia coli, GI87082395, Length=294, Percent_Identity=30.2721088435374, Blast_Score=104, Evalue=6e-24,
Organism=Escherichia coli, GI1788471, Length=332, Percent_Identity=34.6385542168675, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1787793, Length=247, Percent_Identity=32.3886639676113, Blast_Score=98, Evalue=8e-22,
Organism=Escherichia coli, GI1787794, Length=261, Percent_Identity=30.2681992337165, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI145693214, Length=209, Percent_Identity=33.9712918660287, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34117; Mature: 33986

Theoretical pI: Translated: 8.81; Mature: 8.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTQNETLPTERKPLDMRRFLDDWVMLLAAVGIFVACTLLIDNFLSPLNMRGLGLAISTT
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHH
GIAACTMLYCLASGHFDLSVGSVIACAGVVAAVVMRDTNSVFLGVSAALVMGLIVGLING
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHH
IVIAKLRVNALITTLATMQIVRGLAYIFANGKAVGVSQESFFVFGNGQLFGVPVPILITI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEECCEEECCCHHHHHHH
VCFLFFGWLLNYTTYGRNTMAIGGNQEAALLAGVNVDRTKIIIFAVHGVIGALAGVILAS
HHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECCCCCCCEEEEEHHHHHHHHHHHHHHHH
RMTSGQPMIGQGFELTVISACVLGGVSLSGGIGMIRHVIAGVLILAIIENAMNLKNIDTF
HCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
YQYVIRGSILLLAVVIDRLKQR
HHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TTQNETLPTERKPLDMRRFLDDWVMLLAAVGIFVACTLLIDNFLSPLNMRGLGLAISTT
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHH
GIAACTMLYCLASGHFDLSVGSVIACAGVVAAVVMRDTNSVFLGVSAALVMGLIVGLING
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHH
IVIAKLRVNALITTLATMQIVRGLAYIFANGKAVGVSQESFFVFGNGQLFGVPVPILITI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEECCEEECCCHHHHHHH
VCFLFFGWLLNYTTYGRNTMAIGGNQEAALLAGVNVDRTKIIIFAVHGVIGALAGVILAS
HHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECCCCCCCEEEEEHHHHHHHHHHHHHHHH
RMTSGQPMIGQGFELTVISACVLGGVSLSGGIGMIRHVIAGVLILAIIENAMNLKNIDTF
HCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
YQYVIRGSILLLAVVIDRLKQR
HHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; arabinose [Periplasm]; H2O [C]

Specific reaction: ATP + arabinose [Periplasm] + H2O = ADP + phosphate + arabinose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2445996; 9097040; 9278503; 8045430 [H]