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The map label for this gene is rfbA [H]

Identifier: 77460270

GI number: 77460270

Start: 4573842

End: 4574660

Strand: Reverse

Name: rfbA [H]

Synonym: Pfl01_4049

Alternate gene names: 77460270

Gene position: 4574660-4573842 (Counterclockwise)

Preceding gene: 77460271

Following gene: 77460269

Centisome position: 71.05

GC content: 53.6

Gene sequence:

>819_bases
ATGCAAGATTTTTCTACATTACCGCGTGAAATGGTTGCCAGTCTGGTTCGTAACCGGACGTTGATAAGGGCATCTATCAA
GCGGGAGGTACTGGGGCGCTATCGTGGATCGGTTCTGGGTGTGCTCTGGTCGTTTTTCAACCCGGTCTTCATGCTGGCTG
TCTACACATTTGTCTTCAGTGTTGTATTCAAGGCGCGCTGGAGCGGTGGCAGCGATTCGAAAACCGAGTTTGCCCTGATC
CTGTTCGCCGGTCTGATGGTATTCAGCCTGTTTGCGGAATGCATCAACCGGGCGCCGGGCCTTATCGTGTCCAATGCCAA
CTATGTGAAAAAGGTGGTGTATCCCCTGGAAATTCTTCCCTGGGTAAGCCTCGGCGCAGCCATGTTCCATGCGTTGATCA
GCCTGGGTGTGTGGATGCTGGCCTACCTGATTTTCTTCGGCGTGCCACACCTGACGGCTCTGTATCTGCCCCTGGTGATC
ATGCCCCTGGTGTTGGTGATGATGGGGCTTTCCTGGGGATTGGCGTCTCTGGGAGTCTATTTGCGGGATATCGCGCAGTT
CATCGGCATTCTCACTTCCGTGCTGATGTTTCTGTCGCCTATTTTCTATCCGGCCAGTGCGTTGCCCGAGGCGTATCGGC
CGGTACTGATGCTTAACCCGTTGACGCCAGTCATCGAGCAGGCCCGGGATGTACTGTTTTTTGGCCGTGCTCCGGATTTT
TCAATTATCGGTATTTATTTCCTTATAGGGCTGCTGGTCATGTGGTTAGGCTTTGCCTGGTTCCAGAAAACACGCAAGGG
GTTTGCCGATGTCCTCTGA

Upstream 100 bases:

>100_bases
TTTTGTCGTTCGTTTTTGTATTCAAAGAATGGAAGATGTTTGGTATGACGGGCAGTGCGGTCCAGCGTAAGTTTGGTGTC
AACTCAGAGGCCATTGCCTG

Downstream 100 bases:

>100_bases
TTCGGATATTGCGATCAAGGTTGAAAATCTGAGCAAGTGTTACCAGATTTACGACCAGCCCCACGATCGTCTGAAGCAGT
TCCTGGTGAAGGGCCGCAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MQDFSTLPREMVASLVRNRTLIRASIKREVLGRYRGSVLGVLWSFFNPVFMLAVYTFVFSVVFKARWSGGSDSKTEFALI
LFAGLMVFSLFAECINRAPGLIVSNANYVKKVVYPLEILPWVSLGAAMFHALISLGVWMLAYLIFFGVPHLTALYLPLVI
MPLVLVMMGLSWGLASLGVYLRDIAQFIGILTSVLMFLSPIFYPASALPEAYRPVLMLNPLTPVIEQARDVLFFGRAPDF
SIIGIYFLIGLLVMWLGFAWFQKTRKGFADVL

Sequences:

>Translated_272_residues
MQDFSTLPREMVASLVRNRTLIRASIKREVLGRYRGSVLGVLWSFFNPVFMLAVYTFVFSVVFKARWSGGSDSKTEFALI
LFAGLMVFSLFAECINRAPGLIVSNANYVKKVVYPLEILPWVSLGAAMFHALISLGVWMLAYLIFFGVPHLTALYLPLVI
MPLVLVMMGLSWGLASLGVYLRDIAQFIGILTSVLMFLSPIFYPASALPEAYRPVLMLNPLTPVIEQARDVLFFGRAPDF
SIIGIYFLIGLLVMWLGFAWFQKTRKGFADVL
>Mature_272_residues
MQDFSTLPREMVASLVRNRTLIRASIKREVLGRYRGSVLGVLWSFFNPVFMLAVYTFVFSVVFKARWSGGSDSKTEFALI
LFAGLMVFSLFAECINRAPGLIVSNANYVKKVVYPLEILPWVSLGAAMFHALISLGVWMLAYLIFFGVPHLTALYLPLVI
MPLVLVMMGLSWGLASLGVYLRDIAQFIGILTSVLMFLSPIFYPASALPEAYRPVLMLNPLTPVIEQARDVLFFGRAPDF
SIIGIYFLIGLLVMWLGFAWFQKTRKGFADVL

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbB [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 30517; Mature: 30517

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDFSTLPREMVASLVRNRTLIRASIKREVLGRYRGSVLGVLWSFFNPVFMLAVYTFVFS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVFKARWSGGSDSKTEFALILFAGLMVFSLFAECINRAPGLIVSNANYVKKVVYPLEILP
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHH
WVSLGAAMFHALISLGVWMLAYLIFFGVPHLTALYLPLVIMPLVLVMMGLSWGLASLGVY
HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRDIAQFIGILTSVLMFLSPIFYPASALPEAYRPVLMLNPLTPVIEQARDVLFFGRAPDF
HHHHHHHHHHHHHHHHHHHHHHCCHHHCHHHHCCCCEECCCHHHHHHHHHHHHCCCCCCH
SIIGIYFLIGLLVMWLGFAWFQKTRKGFADVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQDFSTLPREMVASLVRNRTLIRASIKREVLGRYRGSVLGVLWSFFNPVFMLAVYTFVFS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVFKARWSGGSDSKTEFALILFAGLMVFSLFAECINRAPGLIVSNANYVKKVVYPLEILP
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHH
WVSLGAAMFHALISLGVWMLAYLIFFGVPHLTALYLPLVIMPLVLVMMGLSWGLASLGVY
HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRDIAQFIGILTSVLMFLSPIFYPASALPEAYRPVLMLNPLTPVIEQARDVLFFGRAPDF
HHHHHHHHHHHHHHHHHHHHHHCCHHHCHHHHCCCCEECCCHHHHHHHHHHHHCCCCCCH
SIIGIYFLIGLLVMWLGFAWFQKTRKGFADVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8626291 [H]