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The map label for this gene is ybhD [H]

Identifier: 77459734

GI number: 77459734

Start: 3990762

End: 3991676

Strand: Reverse

Name: ybhD [H]

Synonym: Pfl01_3512

Alternate gene names: 77459734

Gene position: 3991676-3990762 (Counterclockwise)

Preceding gene: 77459736

Following gene: 77459731

Centisome position: 62.0

GC content: 64.37

Gene sequence:

>915_bases
ATGGCCATCAACTTCGACCTCAACGACCTGCAAGCCTTTCGCGCCGTGGTCGAGCAGGGCAGTTTCCGCAAGGCCGCCGA
CACCGTGCGCCTGTCGCAACCGGCCCTGAGCCGGCGCATCGAAAAGCTCGAAGACGCTCTCGGCGTGAAGCTGTTCGAGC
GCACCACGCGTAAGGTCAGCCTGACCCAGGCCGGACGCGGTTTCATGCCCAGCGTCGAACGCTTGCTCGACGATCTGGAC
GTCGCGTTGCTCGGCATCAGTGAGGTCGCCTCGAATCGGCAGGGCCACGTGACCGTCGCTTGCGTGCCGTCGGCGGCGTA
CTACTTCATGCCGAGCGTCGTCGCCCGTTATCACCGGCAGTTTCCGCGAATCAAAGTCAAAGTCCTCGACTCCAGCGCCC
ACGACGTGCTGAGCGCAGTGGTCAACGGCGAGGCGGATTTCGGCCTGAGTTTCATGGGCACCCAAGAGGCGGGCGTGGAT
TTCGAGCCGCTGGTGCAGGAGAGCTACGTAGTCGCCTGTCGCCGCGATCATCCGCTGGCCGGGCGCAGCAGCGTCACCTG
GGACGAGTTCTACCGGCAGGATTACATCTCGCTGGACAAGACTTCCGGCAATCGTTTTTTGCTCGATCAGGCCCTGGCCA
AAGTGGTGCCGCAGCGCCCTAGCATCTGCGAGACGCGGCATGTGACGACCATGATCGGTCTGGTGGAAGCGGGGTTGGGG
GTGGCAGCGGTGCCATTGATGGCGATGCCGGCGGCGGATCATCCGATCCTGACGCGGGTGCCGCTGACCGATCCGCAAGT
GATGCGCAGTGTCGGCATCATCAAACGCCGGGGTCGTACGCTGACCCCGGCGGCACTGGAGCTGGAGCGGCTGGTGGTGG
AAATGAAGGTCCAGCCGCCGACGGTCAGCGCTTGA

Upstream 100 bases:

>100_bases
GATCTACCGCACAGCCTGCTTGAGCAGATGTGCTTCTGTAATAATTTGCATCAATTGGTTACATTTATAACCTCAACGAA
TCAATTCCTTCGAGTCTTTC

Downstream 100 bases:

>100_bases
CCGAATCCAGCCCGGTGGCCTGTACGTCAGGCTGGGCTGCAGGTGCGGCCAGATAAGCGAGCAACGCTTTGGCTTCCTGC
GGATGCTGCGCACCCACCGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 303

Protein sequence:

>304_residues
MAINFDLNDLQAFRAVVEQGSFRKAADTVRLSQPALSRRIEKLEDALGVKLFERTTRKVSLTQAGRGFMPSVERLLDDLD
VALLGISEVASNRQGHVTVACVPSAAYYFMPSVVARYHRQFPRIKVKVLDSSAHDVLSAVVNGEADFGLSFMGTQEAGVD
FEPLVQESYVVACRRDHPLAGRSSVTWDEFYRQDYISLDKTSGNRFLLDQALAKVVPQRPSICETRHVTTMIGLVEAGLG
VAAVPLMAMPAADHPILTRVPLTDPQVMRSVGIIKRRGRTLTPAALELERLVVEMKVQPPTVSA

Sequences:

>Translated_304_residues
MAINFDLNDLQAFRAVVEQGSFRKAADTVRLSQPALSRRIEKLEDALGVKLFERTTRKVSLTQAGRGFMPSVERLLDDLD
VALLGISEVASNRQGHVTVACVPSAAYYFMPSVVARYHRQFPRIKVKVLDSSAHDVLSAVVNGEADFGLSFMGTQEAGVD
FEPLVQESYVVACRRDHPLAGRSSVTWDEFYRQDYISLDKTSGNRFLLDQALAKVVPQRPSICETRHVTTMIGLVEAGLG
VAAVPLMAMPAADHPILTRVPLTDPQVMRSVGIIKRRGRTLTPAALELERLVVEMKVQPPTVSA
>Mature_303_residues
AINFDLNDLQAFRAVVEQGSFRKAADTVRLSQPALSRRIEKLEDALGVKLFERTTRKVSLTQAGRGFMPSVERLLDDLDV
ALLGISEVASNRQGHVTVACVPSAAYYFMPSVVARYHRQFPRIKVKVLDSSAHDVLSAVVNGEADFGLSFMGTQEAGVDF
EPLVQESYVVACRRDHPLAGRSSVTWDEFYRQDYISLDKTSGNRFLLDQALAKVVPQRPSICETRHVTTMIGLVEAGLGV
AAVPLMAMPAADHPILTRVPLTDPQVMRSVGIIKRRGRTLTPAALELERLVVEMKVQPPTVSA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=290, Percent_Identity=40, Blast_Score=257, Evalue=6e-70,
Organism=Escherichia coli, GI1788748, Length=290, Percent_Identity=31.3793103448276, Blast_Score=138, Evalue=4e-34,
Organism=Escherichia coli, GI1790399, Length=282, Percent_Identity=28.3687943262411, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1787601, Length=298, Percent_Identity=27.8523489932886, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI157672245, Length=273, Percent_Identity=27.4725274725275, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1789204, Length=264, Percent_Identity=28.7878787878788, Blast_Score=115, Evalue=5e-27,
Organism=Escherichia coli, GI87081904, Length=175, Percent_Identity=34.2857142857143, Blast_Score=104, Evalue=9e-24,
Organism=Escherichia coli, GI1787879, Length=246, Percent_Identity=28.4552845528455, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1788481, Length=283, Percent_Identity=25.0883392226148, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1788887, Length=244, Percent_Identity=29.5081967213115, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI2367136, Length=240, Percent_Identity=27.0833333333333, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1790208, Length=288, Percent_Identity=26.7361111111111, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787530, Length=267, Percent_Identity=27.7153558052434, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1788297, Length=248, Percent_Identity=26.2096774193548, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1786508, Length=182, Percent_Identity=29.6703296703297, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI87082132, Length=166, Percent_Identity=25.9036144578313, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787128, Length=147, Percent_Identity=31.2925170068027, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1788296, Length=244, Percent_Identity=22.9508196721311, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1789506, Length=252, Percent_Identity=23.4126984126984, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1790262, Length=241, Percent_Identity=21.1618257261411, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787589, Length=134, Percent_Identity=30.5970149253731, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1789173, Length=147, Percent_Identity=29.9319727891156, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789639, Length=250, Percent_Identity=26, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786401, Length=124, Percent_Identity=32.258064516129, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788706, Length=125, Percent_Identity=32, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1786448, Length=128, Percent_Identity=30.46875, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33458; Mature: 33327

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAINFDLNDLQAFRAVVEQGSFRKAADTVRLSQPALSRRIEKLEDALGVKLFERTTRKVS
CEEECCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHEEE
LTQAGRGFMPSVERLLDDLDVALLGISEVASNRQGHVTVACVPSAAYYFMPSVVARYHRQ
EHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHH
FPRIKVKVLDSSAHDVLSAVVNGEADFGLSFMGTQEAGVDFEPLVQESYVVACRRDHPLA
CCCEEEEEECCCHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHCCEEEEEECCCCCC
GRSSVTWDEFYRQDYISLDKTSGNRFLLDQALAKVVPQRPSICETRHVTTMIGLVEAGLG
CCCCCCHHHHHHHHHCEEECCCCCEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCC
VAAVPLMAMPAADHPILTRVPLTDPQVMRSVGIIKRRGRTLTPAALELERLVVEMKVQPP
HHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHEECCCC
TVSA
CCCC
>Mature Secondary Structure 
AINFDLNDLQAFRAVVEQGSFRKAADTVRLSQPALSRRIEKLEDALGVKLFERTTRKVS
EEECCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHEEE
LTQAGRGFMPSVERLLDDLDVALLGISEVASNRQGHVTVACVPSAAYYFMPSVVARYHRQ
EHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHH
FPRIKVKVLDSSAHDVLSAVVNGEADFGLSFMGTQEAGVDFEPLVQESYVVACRRDHPLA
CCCEEEEEECCCHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHCCEEEEEECCCCCC
GRSSVTWDEFYRQDYISLDKTSGNRFLLDQALAKVVPQRPSICETRHVTTMIGLVEAGLG
CCCCCCHHHHHHHHHCEEECCCCCEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCC
VAAVPLMAMPAADHPILTRVPLTDPQVMRSVGIIKRRGRTLTPAALELERLVVEMKVQPP
HHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHEECCCC
TVSA
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]