Click here to switch to the map view.

The map label for this gene is oprD [H]

Identifier: 77459673

GI number: 77459673

Start: 3936213

End: 3937400

Strand: Direct

Name: oprD [H]

Synonym: Pfl01_3451

Alternate gene names: 77459673

Gene position: 3936213-3937400 (Clockwise)

Preceding gene: 77459672

Following gene: 77459674

Centisome position: 61.14

GC content: 60.02

Gene sequence:

>1188_bases
ATGAGCGCCGATGCCGAGGGCTTCATCGAAGACAGTAAAGCCACGCTGAACCTGCGCAACGCCTACTTCAATCGCAACTT
CGTCAACCCCAACTACCCACAGGGCAAGGCTGAAGAGTGGACACAGAACTTCATCCTCGACGCCAAATCCGGTTTCACTC
AGGGCACGGTCGGCTTTGGCCTGGACGTGCTGGGCATGTATTCGCAGAAGCTCGATGGCGGCAAAGGCACCGGCGGTACG
CAACTGCTACCGATCCACGATGACGGGCGCCCGGCGGACAATTTCGGGCGCCTGGGTGTAGCGCTCAAGGCCAAGGTGTC
GAAGACCGAATTGAAGGTGGGTGAATGGATGCCGGTGCTGCCCATCCTGCGCTCGGATGATGGTCGATCACTGCCCCAGA
CCTTTCGCGGCGGCCAGATCACGTCTACCGAAATCAATGGCCTGACCCTTTACGGTGGCCAGTTCCGTGGCAACAGCCCG
CGTAACGACGCGAGCATGGAAGACATGTCAATGAACGGCCGAGGCGCATTCACCTCCGACCGCTTCAACTTCGGCGGCGG
CGAATACACCTTCAACGATAAGCGCACGCTCGTCGGTGTGTGGTACGCCGAACTCAGCGACATCTACCAGCAGCAGTATT
TCAACCTCAGCCACAGCCAGCCACTGGGCGACTGGACGCTGGGCGCCAACCTCGGTTTCTTCACCGGCAAGGAGGACGGC
AGCGCCCAGGCCGGCGACCTCGACAACAAAACCGCGTTCGCCATGCTTTCGGCCAGATACGGCGGCAACACGTTCTACAT
CGGCTTGCAAAAGCTCAGCGGCGACGATGCCTGGATGCGCGTCAACGGCACCAGCGGCGGCACCCTGGCCAACGACAGCT
ACAACGCCAGTTACGACAACGCGAAGGAGCGCTCCTGGCAGATTCGCCACGACTACAACTTCGTCGTCCTCGGCGTCCCC
GGCTTGACGTTGATGAACCGCTACATCAGCGGCGACAACGTGCACACCGGCACCATCACCGATGGCAAGGAATGGGGTCG
CGAATCGGAACTGGCCTACACCGTGCAGAGCGGCCCGCTGAAGAACCTCAACGTCAAATGGCGCAACGCGACGATTCGCC
GGGACTTCAGCACCAATGAATTCGACGAGAACCGGATCTTCATCAGTTACCCGATTTCGTTGTTGTAA

Upstream 100 bases:

>100_bases
ACTCGTCTGCAATTCCGTCCGCACGTCCCGTTTTTCTATCCCCCGCCCGCGTTCCACCCTAAGCCTGATCGGTTGCAGCA
GTCTGGCCCTCTTCTTGCCG

Downstream 100 bases:

>100_bases
GCCCGTGCATGGCGTGAGCGGAAGGTAAATCCGCCTTCCGTCATTTACACCGAAAGTCGCGTTGACAAGTTCCGGAAACC
CTACCGATACTTCAACGCAG

Product: outer membrane porin

Products: NA

Alternate protein names: Imipenem/basic amino acid-specific outer membrane pore; Outer membrane protein D2 [H]

Number of amino acids: Translated: 395; Mature: 394

Protein sequence:

>395_residues
MSADAEGFIEDSKATLNLRNAYFNRNFVNPNYPQGKAEEWTQNFILDAKSGFTQGTVGFGLDVLGMYSQKLDGGKGTGGT
QLLPIHDDGRPADNFGRLGVALKAKVSKTELKVGEWMPVLPILRSDDGRSLPQTFRGGQITSTEINGLTLYGGQFRGNSP
RNDASMEDMSMNGRGAFTSDRFNFGGGEYTFNDKRTLVGVWYAELSDIYQQQYFNLSHSQPLGDWTLGANLGFFTGKEDG
SAQAGDLDNKTAFAMLSARYGGNTFYIGLQKLSGDDAWMRVNGTSGGTLANDSYNASYDNAKERSWQIRHDYNFVVLGVP
GLTLMNRYISGDNVHTGTITDGKEWGRESELAYTVQSGPLKNLNVKWRNATIRRDFSTNEFDENRIFISYPISLL

Sequences:

>Translated_395_residues
MSADAEGFIEDSKATLNLRNAYFNRNFVNPNYPQGKAEEWTQNFILDAKSGFTQGTVGFGLDVLGMYSQKLDGGKGTGGT
QLLPIHDDGRPADNFGRLGVALKAKVSKTELKVGEWMPVLPILRSDDGRSLPQTFRGGQITSTEINGLTLYGGQFRGNSP
RNDASMEDMSMNGRGAFTSDRFNFGGGEYTFNDKRTLVGVWYAELSDIYQQQYFNLSHSQPLGDWTLGANLGFFTGKEDG
SAQAGDLDNKTAFAMLSARYGGNTFYIGLQKLSGDDAWMRVNGTSGGTLANDSYNASYDNAKERSWQIRHDYNFVVLGVP
GLTLMNRYISGDNVHTGTITDGKEWGRESELAYTVQSGPLKNLNVKWRNATIRRDFSTNEFDENRIFISYPISLL
>Mature_394_residues
SADAEGFIEDSKATLNLRNAYFNRNFVNPNYPQGKAEEWTQNFILDAKSGFTQGTVGFGLDVLGMYSQKLDGGKGTGGTQ
LLPIHDDGRPADNFGRLGVALKAKVSKTELKVGEWMPVLPILRSDDGRSLPQTFRGGQITSTEINGLTLYGGQFRGNSPR
NDASMEDMSMNGRGAFTSDRFNFGGGEYTFNDKRTLVGVWYAELSDIYQQQYFNLSHSQPLGDWTLGANLGFFTGKEDGS
AQAGDLDNKTAFAMLSARYGGNTFYIGLQKLSGDDAWMRVNGTSGGTLANDSYNASYDNAKERSWQIRHDYNFVVLGVPG
LTLMNRYISGDNVHTGTITDGKEWGRESELAYTVQSGPLKNLNVKWRNATIRRDFSTNEFDENRIFISYPISLL

Specific function: Porin with a specificity for basic amino acids. Also possesses serine protease activity [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the oprD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005318 [H]

Pfam domain/function: PF03573 OprD [H]

EC number: NA

Molecular weight: Translated: 43671; Mature: 43540

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: PS00309 GALAPTIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSADAEGFIEDSKATLNLRNAYFNRNFVNPNYPQGKAEEWTQNFILDAKSGFTQGTVGFG
CCCCCCCCEECCCEEEEEEHHEECCCCCCCCCCCCCHHHHHHHEEEECCCCCCCCCHHCC
LDVLGMYSQKLDGGKGTGGTQLLPIHDDGRPADNFGRLGVALKAKVSKTELKVGEWMPVL
HHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEECCHHEEECCCCCCCC
PILRSDDGRSLPQTFRGGQITSTEINGLTLYGGQFRGNSPRNDASMEDMSMNGRGAFTSD
CEEECCCCCCCHHHHCCCEEEEEEECCEEEECCEECCCCCCCCCCCHHCCCCCCCCCCCC
RFNFGGGEYTFNDKRTLVGVWYAELSDIYQQQYFNLSHSQPLGDWTLGANLGFFTGKEDG
CEECCCCEEEECCCEEEEEEHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCEEEECCCCC
SAQAGDLDNKTAFAMLSARYGGNTFYIGLQKLSGDDAWMRVNGTSGGTLANDSYNASYDN
CCCCCCCCCCEEEEEEEEEECCCEEEEEEEEECCCCEEEEEECCCCCEECCCCCCCCCCC
AKERSWQIRHDYNFVVLGVPGLTLMNRYISGDNVHTGTITDGKEWGRESELAYTVQSGPL
CHHCCEEEEECCCEEEECCCCHHHHHHHCCCCCEEECCCCCHHHHCCCCCEEEEEECCCC
KNLNVKWRNATIRRDFSTNEFDENRIFISYPISLL
CCCEEEEECEEEEECCCCCCCCCCEEEEEECCCCC
>Mature Secondary Structure 
SADAEGFIEDSKATLNLRNAYFNRNFVNPNYPQGKAEEWTQNFILDAKSGFTQGTVGFG
CCCCCCCEECCCEEEEEEHHEECCCCCCCCCCCCCHHHHHHHEEEECCCCCCCCCHHCC
LDVLGMYSQKLDGGKGTGGTQLLPIHDDGRPADNFGRLGVALKAKVSKTELKVGEWMPVL
HHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEECCHHEEECCCCCCCC
PILRSDDGRSLPQTFRGGQITSTEINGLTLYGGQFRGNSPRNDASMEDMSMNGRGAFTSD
CEEECCCCCCCHHHHCCCEEEEEEECCEEEECCEECCCCCCCCCCCHHCCCCCCCCCCCC
RFNFGGGEYTFNDKRTLVGVWYAELSDIYQQQYFNLSHSQPLGDWTLGANLGFFTGKEDG
CEECCCCEEEECCCEEEEEEHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCEEEECCCCC
SAQAGDLDNKTAFAMLSARYGGNTFYIGLQKLSGDDAWMRVNGTSGGTLANDSYNASYDN
CCCCCCCCCCEEEEEEEEEECCCEEEEEEEEECCCCEEEEEECCCCCEECCCCCCCCCCC
AKERSWQIRHDYNFVVLGVPGLTLMNRYISGDNVHTGTITDGKEWGRESELAYTVQSGPL
CHHCCEEEEECCCEEEECCCCHHHHHHHCCCCCEEECCCCCHHHHCCCCCEEEEEECCCC
KNLNVKWRNATIRRDFSTNEFDENRIFISYPISLL
CCCEEEEECEEEEECCCCCCCCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1339257; 1427017; 10984043; 8012497; 2118530; 8843159; 9636669 [H]