| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is yeiA [H]
Identifier: 77459665
GI number: 77459665
Start: 3927892
End: 3929166
Strand: Direct
Name: yeiA [H]
Synonym: Pfl01_3443
Alternate gene names: 77459665
Gene position: 3927892-3929166 (Clockwise)
Preceding gene: 77459664
Following gene: 77459667
Centisome position: 61.01
GC content: 62.35
Gene sequence:
>1275_bases ATGGCCGATCTCTCGATAGTCTTCGCCGGTATCAAAGCCCCCAACCCGTTCTGGCTGGCCTCCGCGCCGCCGACCGACAA GGCCTACAACGTGGTGCGCGCCTTCGAGGCCGGCTGGGGCGGCGTGGTCTGGAAAACCCTGGGTGAAGACCCGGCGGCGG TCAACGTGTCGTCGCGTTATTCGGCGCATTACGGCGCCAACCGCGAAGTGCTGGGCATCAACAACATCGAACTGATCACC GACCGCTCGCTGGAAATCAACCTGCGGGAAATCACCCAGGTGAAAAAGGACTGGCCGGATCGCGCGCTGATCGTGTCGCT GATGGTGCCCTGCGTCGAAGAGTCGTGGAAACACATCCTGCCGTTGGTGGAAGCCACCGGCGCCGACGGCATCGAGCTGA ATTTCGGCTGCCCCCACGGCATGCCCGAGCGCGGCATGGGCGCGGCGGTCGGTCAGGTGCCGGAGTACGTCGAGCAGGTC ACGCGCTGGTGCAAGACCTATTGCTCGCTGCCGGTGATCGTCAAACTCACACCGAACATCACCGACATCCGCGTCGCCGC CCGAGCCGCACACCGGGGCGGCGCCGATGCGGTGTCGCTGATCAACACCATCAACTCGATCACCAGCGTCGACCTCGAAC ACATGGTCGCCCTGCCCACCGTCGGCAGCAAAAGCACCCACGGCGGTTATTGCGGCTCGGCGGTCAAGCCGATCGCGCTG AACATGGTCGCGGAAATCGCCCGTGACCCGCAGACCCAGGGCCTGCCGATCTGCGGCATTGGCGGCATTGGCAGCTGGCG TGACGCGGCGGAGTTCATCGCACTGGGCAGCGGCGCGGTGCAAGTGTGCACGGCGGCGATGCTGCACGGCTTCCGGATTG TCGATGAGATGAAGGATGGCCTGTCGCGGTGGATGGACAGTCAGGGTTACGCCAGCATTGCCGAGTTTTCCGGGCGCGCG GTGGGCAACACCACGGACTGGAAGTATTTGGACATCAACTATCAGGTCATCGCGAAGATCGATCAGGAAGCGTGTATCGG ATGCGGGCGTTGCCACATTGCCTGCGAAGACACTTCACACCAGGCGATCAGCAGTCTGAAACAGGCCGATGGCACGCATA AATATGAAGTGATCGATGATGAGTGTGTGGGGTGCAATCTGTGCCAGATCACCTGTCCGGTGGCGGACTGCATCGAGATG GTGCCGATGGAAACGGGCAAGCCGTTTCTGGACTGGAATCATGATCCGAGGAATCCGTATCACGTTGCGGTCTAG
Upstream 100 bases:
>100_bases CAGCCTCGATCAGGACCTGACCGTGCAAGCGGTGCAACACGGCAAGCGCGCCGCCGAGGCGATCAACGCTCAACTGATGC TCAACGTGGAGGCTGCGTAA
Downstream 100 bases:
>100_bases ATCGCCTGTGGATCCGGAAGCCCCCTCACCCTAGCCCTCTCCCAAAGGGAGAGGGAACCGACCGGGGAATATTGATGAAC TGCACCGACGTGAAAGTTTT
Product: dihydropyrimidine dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 424; Mature: 423
Protein sequence:
>424_residues MADLSIVFAGIKAPNPFWLASAPPTDKAYNVVRAFEAGWGGVVWKTLGEDPAAVNVSSRYSAHYGANREVLGINNIELIT DRSLEINLREITQVKKDWPDRALIVSLMVPCVEESWKHILPLVEATGADGIELNFGCPHGMPERGMGAAVGQVPEYVEQV TRWCKTYCSLPVIVKLTPNITDIRVAARAAHRGGADAVSLINTINSITSVDLEHMVALPTVGSKSTHGGYCGSAVKPIAL NMVAEIARDPQTQGLPICGIGGIGSWRDAAEFIALGSGAVQVCTAAMLHGFRIVDEMKDGLSRWMDSQGYASIAEFSGRA VGNTTDWKYLDINYQVIAKIDQEACIGCGRCHIACEDTSHQAISSLKQADGTHKYEVIDDECVGCNLCQITCPVADCIEM VPMETGKPFLDWNHDPRNPYHVAV
Sequences:
>Translated_424_residues MADLSIVFAGIKAPNPFWLASAPPTDKAYNVVRAFEAGWGGVVWKTLGEDPAAVNVSSRYSAHYGANREVLGINNIELIT DRSLEINLREITQVKKDWPDRALIVSLMVPCVEESWKHILPLVEATGADGIELNFGCPHGMPERGMGAAVGQVPEYVEQV TRWCKTYCSLPVIVKLTPNITDIRVAARAAHRGGADAVSLINTINSITSVDLEHMVALPTVGSKSTHGGYCGSAVKPIAL NMVAEIARDPQTQGLPICGIGGIGSWRDAAEFIALGSGAVQVCTAAMLHGFRIVDEMKDGLSRWMDSQGYASIAEFSGRA VGNTTDWKYLDINYQVIAKIDQEACIGCGRCHIACEDTSHQAISSLKQADGTHKYEVIDDECVGCNLCQITCPVADCIEM VPMETGKPFLDWNHDPRNPYHVAV >Mature_423_residues ADLSIVFAGIKAPNPFWLASAPPTDKAYNVVRAFEAGWGGVVWKTLGEDPAAVNVSSRYSAHYGANREVLGINNIELITD RSLEINLREITQVKKDWPDRALIVSLMVPCVEESWKHILPLVEATGADGIELNFGCPHGMPERGMGAAVGQVPEYVEQVT RWCKTYCSLPVIVKLTPNITDIRVAARAAHRGGADAVSLINTINSITSVDLEHMVALPTVGSKSTHGGYCGSAVKPIALN MVAEIARDPQTQGLPICGIGGIGSWRDAAEFIALGSGAVQVCTAAMLHGFRIVDEMKDGLSRWMDSQGYASIAEFSGRAV GNTTDWKYLDINYQVIAKIDQEACIGCGRCHIACEDTSHQAISSLKQADGTHKYEVIDDECVGCNLCQITCPVADCIEMV PMETGKPFLDWNHDPRNPYHVAV
Specific function: Unknown
COG id: COG0167
COG function: function code F; Dihydroorotate dehydrogenase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]
Homologues:
Organism=Homo sapiens, GI119943098, Length=439, Percent_Identity=32.8018223234624, Blast_Score=213, Evalue=3e-55, Organism=Escherichia coli, GI87082059, Length=398, Percent_Identity=43.21608040201, Blast_Score=327, Evalue=1e-90, Organism=Caenorhabditis elegans, GI71984108, Length=327, Percent_Identity=39.7553516819572, Blast_Score=219, Evalue=1e-57, Organism=Saccharomyces cerevisiae, GI6322633, Length=249, Percent_Identity=27.3092369477912, Blast_Score=76, Evalue=9e-15, Organism=Drosophila melanogaster, GI24640763, Length=301, Percent_Identity=42.8571428571429, Blast_Score=234, Evalue=7e-62, Organism=Drosophila melanogaster, GI18858217, Length=301, Percent_Identity=42.8571428571429, Blast_Score=234, Evalue=7e-62,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017896 - InterPro: IPR017900 - InterPro: IPR013785 - InterPro: IPR005720 - InterPro: IPR012135 - InterPro: IPR012285 [H]
Pfam domain/function: PF01180 DHO_dh [H]
EC number: NA
Molecular weight: Translated: 45840; Mature: 45709
Theoretical pI: Translated: 5.13; Mature: 5.13
Prosite motif: PS00198 4FE4S_FERREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.8 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 6.4 %Cys+Met (Translated Protein) 3.8 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 6.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADLSIVFAGIKAPNPFWLASAPPTDKAYNVVRAFEAGWGGVVWKTLGEDPAAVNVSSRY CCCCEEEEEECCCCCCEEECCCCCCHHHHHHHHHHHCCCCCEEHHCCCCCCCEEEECCCC SAHYGANREVLGINNIELITDRSLEINLREITQVKKDWPDRALIVSLMVPCVEESWKHIL CCCCCCCCEEEECCCEEEEECCCEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH PLVEATGADGIELNFGCPHGMPERGMGAAVGQVPEYVEQVTRWCKTYCSLPVIVKLTPNI HHHHCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC TDIRVAARAAHRGGADAVSLINTINSITSVDLEHMVALPTVGSKSTHGGYCGSAVKPIAL HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHEEECCCCCCCCCCCCCCCCCCHHHH NMVAEIARDPQTQGLPICGIGGIGSWRDAAEFIALGSGAVQVCTAAMLHGFRIVDEMKDG HHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH LSRWMDSQGYASIAEFSGRAVGNTTDWKYLDINYQVIAKIDQEACIGCGRCHIACEDTSH HHHHHCCCCCHHHHHHCCCCCCCCCCCEEEECCCEEEEEECHHHHCCCCEEEEEECCCHH QAISSLKQADGTHKYEVIDDECVGCNLCQITCPVADCIEMVPMETGKPFLDWNHDPRNPY HHHHHHHHCCCCEEEEEECCCCCCCEEEEEECCHHHHHHHCCCCCCCCCCCCCCCCCCCE HVAV EECC >Mature Secondary Structure ADLSIVFAGIKAPNPFWLASAPPTDKAYNVVRAFEAGWGGVVWKTLGEDPAAVNVSSRY CCCEEEEEECCCCCCEEECCCCCCHHHHHHHHHHHCCCCCEEHHCCCCCCCEEEECCCC SAHYGANREVLGINNIELITDRSLEINLREITQVKKDWPDRALIVSLMVPCVEESWKHIL CCCCCCCCEEEECCCEEEEECCCEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH PLVEATGADGIELNFGCPHGMPERGMGAAVGQVPEYVEQVTRWCKTYCSLPVIVKLTPNI HHHHCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC TDIRVAARAAHRGGADAVSLINTINSITSVDLEHMVALPTVGSKSTHGGYCGSAVKPIAL HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHEEECCCCCCCCCCCCCCCCCCHHHH NMVAEIARDPQTQGLPICGIGGIGSWRDAAEFIALGSGAVQVCTAAMLHGFRIVDEMKDG HHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH LSRWMDSQGYASIAEFSGRAVGNTTDWKYLDINYQVIAKIDQEACIGCGRCHIACEDTSH HHHHHCCCCCHHHHHHCCCCCCCCCCCEEEECCCEEEEEECHHHHCCCCEEEEEECCCHH QAISSLKQADGTHKYEVIDDECVGCNLCQITCPVADCIEMVPMETGKPFLDWNHDPRNPY HHHHHHHHCCCCEEEEEECCCCCCCEEEEEECCHHHHHHHCCCCCCCCCCCCCCCCCCCE HVAV EECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: Fe [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503; 1719366 [H]