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The map label for this gene is fecI [C]

Identifier: 77459658

GI number: 77459658

Start: 3919122

End: 3920015

Strand: Reverse

Name: fecI [C]

Synonym: Pfl01_3436

Alternate gene names: 77459658

Gene position: 3920015-3919122 (Counterclockwise)

Preceding gene: 77459659

Following gene: 77459648

Centisome position: 60.88

GC content: 61.41

Gene sequence:

>894_bases
ATGAACTTCGCTGAAAAAACCGTCGCTGTGTTCGAACAGCGACGACCCTTTCTGCTGGGGCTGGCGTATCGCATTCTCGG
TTCCCGCGTGGAAGCCGAGGATGCGGTGCAAGAGCTGTTCATCAAATGGCTGGAGGCCGATCAGGTCTCCATTGCCACAC
CGGCCGCGTGGCTGACCACCGCCTGCACTCGCCACTGCATCGACCTGCTGCGTTCGGCGCACAAGTCCCGTGTCGATTAC
ATGGGCACTTGGTTGCCGGAGCCGATTCACACCACCCTCCACGAATCGCCTGAACACATGCATGAACTCGCCGCGTCGCT
GTCCACCGCGTTCCTGCTGATGCTCGAACGGCTGACGCCCAAGGAACGGGCGGCGTATCTGCTGCACGACATCTTCGATT
TCGATTACTCGCAGGTCGCTGAAACCCTCGGCATTCAGGAAGCCGCGTGCCGCAAACTGGTGTCCCGGGCCAAGGCGAGC
ATCGGTGGCGAGCAGATCCGTTTTCAGCCGGAGCCGGCGCGTCAGTCGCAGTTGCTGGATGCCTTTCATTCGGCCATCGC
CAGCGGCTCGACCAACGCCCTCAGTGCGCTGCTGAGCGAAGACGTCGAACTCTGCGCCGACAGCGGCGGCAAGGCGTCGG
CGATCCGCGAAACCTTGTTCGGCCAGAAGCATGTGCTGGACTTCATTGGCCAATCGCTGCACGCCTACTGGCAGGCGCAG
GAGTGGCTGCCGGTCGAGATCAATGGCGCGCAGGGCGTAGTGATCAAGGCCGACGGCCTCATCACTGCTTCGATGACGTT
CGGGTTCAATCAGGCGGGGCAGGTGAACCGGATTTTCATCATGCGTAACCCGCAGAAACTGGCCGGGTTGCCGACTACCT
TGAACCTGCAATGA

Upstream 100 bases:

>100_bases
CCTGCGCGAACATTTCAACGACGCGCAGATCGCTGCCTTGACGGCGGAAATCGGCATGATCAACCTGTGGAACCGTTTGC
AGGTGTCGAGGCACTGATCG

Downstream 100 bases:

>100_bases
AACGCCGAGACGTGCCGGGTGCGTTCGCCCCGGCACGCGTCCGGTCCTAGAACTTGAAGACGCCGGGGTAGTCTTCCTGC
GGCTCGCCCTTGCGGTCATA

Product: sigma-24 (FecI)

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Subunit; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma Factor SigJ; Sigma Factor; RNA Polymerase ECF-Subfamily Sigma Factor; Sigma-; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma Factor; ECF Family RNA Polymerase Sigma Factor; ECF-Sigma Factor; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma Factor Sigma-70 Family Protein; RNA Polymerase ECF-Type Sigma Factor; Sigma Factor Sigma; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase; Sigma-70 Family RNA Polymerase; Sigma-70 Region 2 Domain-Containing Protein; ECF-Family Protein RNA Polymerase Sigma Factor; Sigma-70 Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma-24 Factor Protein; RNA Polymerase Sigma Subunit ECF Family; RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma-70 Factor Family; ECF-Type Sigma Factor; RNA Polymerase Sigma-70 ECF Type; RNA Polymerase Sigma-70 Factor Protein; Sigma-70 Factor; RNA Polymerase Sigma Factor Protein; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma Subunit; AlteRNAtive RNA Polymerase Sigma Factor; AlteRNAtive RNA Polymerase Sigma Factor SigJ; RNA Polymerase Sigma-70-Like Factor

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MNFAEKTVAVFEQRRPFLLGLAYRILGSRVEAEDAVQELFIKWLEADQVSIATPAAWLTTACTRHCIDLLRSAHKSRVDY
MGTWLPEPIHTTLHESPEHMHELAASLSTAFLLMLERLTPKERAAYLLHDIFDFDYSQVAETLGIQEAACRKLVSRAKAS
IGGEQIRFQPEPARQSQLLDAFHSAIASGSTNALSALLSEDVELCADSGGKASAIRETLFGQKHVLDFIGQSLHAYWQAQ
EWLPVEINGAQGVVIKADGLITASMTFGFNQAGQVNRIFIMRNPQKLAGLPTTLNLQ

Sequences:

>Translated_297_residues
MNFAEKTVAVFEQRRPFLLGLAYRILGSRVEAEDAVQELFIKWLEADQVSIATPAAWLTTACTRHCIDLLRSAHKSRVDY
MGTWLPEPIHTTLHESPEHMHELAASLSTAFLLMLERLTPKERAAYLLHDIFDFDYSQVAETLGIQEAACRKLVSRAKAS
IGGEQIRFQPEPARQSQLLDAFHSAIASGSTNALSALLSEDVELCADSGGKASAIRETLFGQKHVLDFIGQSLHAYWQAQ
EWLPVEINGAQGVVIKADGLITASMTFGFNQAGQVNRIFIMRNPQKLAGLPTTLNLQ
>Mature_297_residues
MNFAEKTVAVFEQRRPFLLGLAYRILGSRVEAEDAVQELFIKWLEADQVSIATPAAWLTTACTRHCIDLLRSAHKSRVDY
MGTWLPEPIHTTLHESPEHMHELAASLSTAFLLMLERLTPKERAAYLLHDIFDFDYSQVAETLGIQEAACRKLVSRAKAS
IGGEQIRFQPEPARQSQLLDAFHSAIASGSTNALSALLSEDVELCADSGGKASAIRETLFGQKHVLDFIGQSLHAYWQAQ
EWLPVEINGAQGVVIKADGLITASMTFGFNQAGQVNRIFIMRNPQKLAGLPTTLNLQ

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Regulates The Fec Genes For Iron Dicitrate Transport (Probable). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32889; Mature: 32889

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFAEKTVAVFEQRRPFLLGLAYRILGSRVEAEDAVQELFIKWLEADQVSIATPAAWLTT
CCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEECCCHHHHHH
ACTRHCIDLLRSAHKSRVDYMGTWLPEPIHTTLHESPEHMHELAASLSTAFLLMLERLTP
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCH
KERAAYLLHDIFDFDYSQVAETLGIQEAACRKLVSRAKASIGGEQIRFQPEPARQSQLLD
HHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHH
AFHSAIASGSTNALSALLSEDVELCADSGGKASAIRETLFGQKHVLDFIGQSLHAYWQAQ
HHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
EWLPVEINGAQGVVIKADGLITASMTFGFNQAGQVNRIFIMRNPQKLAGLPTTLNLQ
CCEEEEECCCCEEEEEECCEEEEEEECCCCCCCCCEEEEEEECCHHHHCCCCEECCC
>Mature Secondary Structure
MNFAEKTVAVFEQRRPFLLGLAYRILGSRVEAEDAVQELFIKWLEADQVSIATPAAWLTT
CCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEECCCHHHHHH
ACTRHCIDLLRSAHKSRVDYMGTWLPEPIHTTLHESPEHMHELAASLSTAFLLMLERLTP
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCH
KERAAYLLHDIFDFDYSQVAETLGIQEAACRKLVSRAKASIGGEQIRFQPEPARQSQLLD
HHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHH
AFHSAIASGSTNALSALLSEDVELCADSGGKASAIRETLFGQKHVLDFIGQSLHAYWQAQ
HHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
EWLPVEINGAQGVVIKADGLITASMTFGFNQAGQVNRIFIMRNPQKLAGLPTTLNLQ
CCEEEEECCCCEEEEEECCEEEEEEECCCCCCCCCEEEEEEECCHHHHCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA